Salmonellosis in garden birds in Scotland, 1995 to 2008: geographic region, Salmonella enterica phage type and bird species

2010 ◽  
Vol 166 (14) ◽  
pp. 419-421 ◽  
Author(s):  
T. W. Pennycott ◽  
H. A. Mather ◽  
G. Bennett ◽  
G. Foster
Keyword(s):  
Salmonella Enterica ◽  
Phage Type ◽  
Bird Species ◽  
Geographic Region ◽  
Garden Birds

scholarly journals Characterization of the Genomes of a Diverse Collection of Salmonella enterica Serovar Typhimurium Definitive Phage Type 104

2008 ◽  
Vol 190 (24) ◽  
pp. 8155-8162 ◽  
Author(s):  
Fiona J. Cooke ◽  
Derek J. Brown ◽  
Maria Fookes ◽  
Derek Pickard ◽  
Alasdair Ivens ◽  
...  
Keyword(s):  
Salmonella Enterica ◽  
Salmonella Enterica Serovar Typhimurium ◽  
Fragment Size ◽  
Phage Type ◽  
Antibiotic Resistance Genes ◽  
Serovar Typhimurium ◽  
Mlst Type ◽  
Plasmid Profiling ◽  
Type Sequence

ABSTRACT Salmonella enterica serovar Typhimurium definitive phage type 104 (DT104) has caused significant morbidity and mortality in humans and animals for almost three decades. We completed the full DNA sequence of one DT104 strain, NCTC13348, and showed that significant differences between the genome of this isolate and the genome of the previously sequenced strain Salmonella serovar Typhimurium LT2 are due to integrated prophage elements and Salmonella genomic island 1 encoding antibiotic resistance genes. Thirteen isolates of Salmonella serovar Typhimurium DT104 with different pulsed-field gel electrophoresis (PFGE) profiles were analyzed by using multilocus sequence typing (MLST), plasmid profiling, hybridization to a pan-Salmonella DNA microarray, and prophage-based multiplex PCR. All the isolates belonged to a single MLST type, sequence type ST19. Microarray data demonstrated that the gene contents of the 13 DT104 isolates were remarkably conserved. The PFGE DNA fragment size differences in these isolates could be explained to a great extent by differences in the prophage and plasmid contents. Thus, here the nature of variation in different Salmonella serovar Typhimurium DT104 isolates is further defined at the gene and whole-genome levels, illustrating how this phage type evolves over time.

scholarly journals Outbreaks of monophasic Salmonella enterica serovar 4,[5],12:i:- in Luxembourg, 2006

2007 ◽  
Vol 12 (6) ◽  
pp. 11-12 ◽  
Author(s):  
J Mossong ◽  
P Marques ◽  
C Ragimbeau ◽  
P Huberty-Krau ◽  
S Losch ◽  
...  
Keyword(s):  
Antibiotic Resistance ◽  
Gel Electrophoresis ◽  
Salmonella Enterica ◽  
Phage Type ◽  
The Elderly ◽  
Pulsed Field Gel Electrophoresis ◽  
Pork Meat ◽  
Outbreak Strain ◽  
Day Care Centers ◽  
Antibiotic Resistance Profile

A monophasic Salmonella enterica serovar 4,[5],12:i:- phage type DT193 emerged as the dominant serovar in Luxembourg in 2006, when it caused two major outbreaks involving 133 laboratory-confirmed human cases, 24 hospitalisations, and one death. The outbreak strain had an uncommon pulsed-field gel electrophoresis pattern STYMXB.0031 and antibiotic resistance profile ASSuT. A high proportion of cases were clustered in institutions for the elderly and in day-care centers. Strains identical to the outbreak strain were recovered from two control meals, a nappy changing table, retail sausages and caecal porcine samples at an abattoir. Locally produced pork meat is strongly suspected to have been the vehicle for the outbreaks, although the precise mechanisms remain unclear.

Characterization of SEN3800-associated virulence of Salmonella enterica serovar Enteritidis phage type 8

2014 ◽  
Vol 65 (2) ◽  
pp. 631-637
Author(s):  
Daniel C. Shippy ◽  
Nicholas M. Eakley ◽  
Dareen M. Mikheil ◽  
Anna De La Cotera ◽  
Amin A. Fadl
Keyword(s):  
Salmonella Enterica ◽  
Phage Type ◽  
Salmonella Enterica Serovar Enteritidis

scholarly journals Correlation of Phenotype with the Genotype of Egg-Contaminating Salmonella enterica Serovar Enteritidis

2005 ◽  
Vol 71 (8) ◽  
pp. 4388-4399 ◽  
Author(s):  
Cesar A. Morales ◽  
Steffen Porwollik ◽  
Jonathan G. Frye ◽  
Hailu Kinde ◽  
Michael McClelland ◽  
...  
Keyword(s):  
Microarray Analysis ◽  
Dna Sequences ◽  
Salmonella Enterica ◽  
Respiratory Activity ◽  
Phage Type ◽  
Field Isolate ◽  
Phenotype Microarray ◽  
Wild Type ◽  
Genomic Changes ◽  
Phage Types

ABSTRACT The genotype of Salmonella enterica serovar Enteritidis was correlated with the phenotype using DNA-DNA microarray hybridization, ribotyping, and Phenotype MicroArray analysis to compare three strains that differed in colony morphology and phage type. No DNA hybridization differences were found between two phage type 13A (PT13A) strains that varied in biofilm formation; however, the ribotype patterns were different. Both PT13A strains had DNA sequences similar to that of bacteriophage Fels2, whereas the PT4 genome to which they were compared, as well as a PT4 field isolate, had a DNA sequence with some similarity to the bacteriophage ST64b sequence. Phenotype MicroArray analysis indicated that the two PT13A strains and the PT4 field isolate had similar respiratory activity profiles at 37°C. However, the wild-type S. enterica serovar Enteritidis PT13A strain grew significantly better in 20% more of the 1,920 conditions tested when it was assayed at 25°C than the biofilm-forming PT13A strain grew. Statistical analysis of the respiratory activity suggested that S. enterica serovar Enteritidis PT4 had a temperature-influenced dimorphic metabolism which at 25°C somewhat resembled the profile of the biofilm-forming PT13A strain and that at 37°C the metabolism was nearly identical to that of the wild-type PT13A strain. Although it is possible that lysogenic bacteriophage alter the balance of phage types on a farm either by lytic competition or by altering the metabolic processes of the host cell in subtle ways, the different physiologies of the S. enterica serovar Enteritidis strains correlated most closely with minor, rather than major, genomic changes. These results strongly suggest that the pandemic of egg-associated human salmonellosis that came into prominence in the 1980s is primarily an example of bacterial adaptive radiation that affects the safety of the food supply.

scholarly journals Application of Fourier Transform Infrared Spectroscopy and Chemometrics for Differentiation of Salmonella enterica Serovar Enteritidis Phage Types

2010 ◽  
Vol 76 (11) ◽  
pp. 3538-3544 ◽  
Author(s):  
Ornella Preisner ◽  
Raquel Guiomar ◽  
Jorge Machado ◽  
Jos� Cardoso Menezes ◽  
Jo�o Almeida Lopes
Keyword(s):  
Fourier Transform ◽  
Ir Spectra ◽  
Salmonella Enterica ◽  
Intact Cell ◽  
Phage Type ◽  
Fourier Transform Infrared ◽  
Intact Cells ◽  
Phage Types ◽  
Ft Ir ◽  
Ir Analysis

ABSTRACT Fourier transform infrared (FT-IR) spectroscopy and chemometric techniques were used to discriminate five closely related Salmonella enterica serotype Enteritidis phage types, phage type 1 (PT1), PT1b, PT4b, PT6, and PT6a. Intact cells and outer membrane protein (OMP) extracts from bacterial cell membranes were subjected to FT-IR analysis in transmittance mode. Spectra were collected over a wavenumber range from 4,000 to 600 cm−1. Partial least-squares discriminant analysis (PLS-DA) was used to develop calibration models based on preprocessed FT-IR spectra. The analysis based on OMP extracts provided greater separation between the Salmonella Enteritidis PT1-PT1b, PT4b, and PT6-PT6a groups than the intact cell analysis. When these three phage type groups were considered, the method based on OMP extract FT-IR spectra was 100% accurate. Moreover, complementary local models that considered only the PT1-PT1b and PT6-PT6a groups were developed, and the level of discrimination increased. PT1 and PT1b isolates were differentiated successfully with the local model using the entire OMP extract spectrum (98.3% correct predictions), whereas the accuracy of discrimination between PT6 and PT6a isolates was 86.0%. Isolates belonging to different phage types (PT19, PT20, and PT21) were used with the model to test its robustness. For the first time it was demonstrated that FT-IR analysis of OMP extracts can be used for construction of robust models that allow fast and accurate discrimination of different Salmonella Enteritidis phage types.

scholarly journals Usefulness of High-Quality Core Genome Single-Nucleotide Variant Analysis for Subtyping the Highly Clonal and the Most Prevalent Salmonella enterica Serovar Heidelberg Clone in the Context of Outbreak Investigations

2015 ◽  
Vol 54 (2) ◽  
pp. 289-295 ◽  
Author(s):  
S. Bekal ◽  
C. Berry ◽  
A. R. Reimer ◽  
G. Van Domselaar ◽  
G. Beaudry ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Salmonella Enterica ◽  
Core Genome ◽  
Phage Type ◽  
Epidemiological Data ◽  
Single Nucleotide Variant ◽  
High Quality ◽  
Typing Method ◽  
Single Nucleotide ◽  
Content Type

Salmonella entericaserovar Heidelberg is the second most frequently occurring serovar in Quebec and the third-most prevalent in Canada. Given that conventional pulsed-field gel electrophoresis (PFGE) subtyping for commonSalmonellaserovars, such asS. Heidelberg, yields identical subtypes for the majority of isolates recovered, public health laboratories are desperate for new subtyping tools to resolve highly clonalS. Heidelberg strains involved in outbreak events. As PFGE was unable to discriminate isolates from three epidemiologically distinct outbreaks in Quebec, this study was conducted to evaluate whole-genome sequencing (WGS) and phylogenetic analysis as an alternative to conventional subtyping tools. Genomes of 46 isolates from 3 Quebec outbreaks (2012, 2013, and 2014) supported by strong epidemiological evidence were sequenced and analyzed using a high-quality core genome single-nucleotide variant (hqSNV) bioinformatics approach (SNV phylogenomics [SNVphyl] pipeline). Outbreaks were indistinguishable by conventional PFGE subtyping, exhibiting the same PFGE pattern (SHEXAI.0001/SHEBNI.0001). Phylogenetic analysis based on hqSNVs extracted from WGS separated the outbreak isolates into three distinct groups, 100% concordant with the epidemiological data. The minimum and maximum number of hqSNVs between isolates from the same outbreak was 0 and 4, respectively, while >59 hqSNVs were measured between 2 previously indistinguishable outbreaks having the same PFGE and phage type, thus corroborating their distinction as separate unrelated outbreaks. This study demonstrates that despite the previously reported high clonality of this serovar, the WGS-based hqSNV approach is a superior typing method, capable of resolving events that were previously indistinguishable using classic subtyping tools.

scholarly journals In Vitro and In Vivo Assessment of Salmonella enterica Serovar Typhimurium DT104 Virulence

2001 ◽  
Vol 69 (7) ◽  
pp. 4673-4677 ◽  
Author(s):  
Chris A. Allen ◽  
Paula J. Fedorka-Cray ◽  
Andrés Vazquez-Torres ◽  
Mitsu Suyemoto ◽  
Craig Altier ◽  
...  
Keyword(s):  
Salmonella Enterica ◽  
Phage Type ◽  
Multidrug Resistant ◽  
Peritoneal Macrophages ◽  
Lethal Infection ◽  
Animal Infection ◽  
Serovar Typhimurium ◽  
Clinical Illness

ABSTRACT Multidrug-resistant Salmonella enterica serovar Typhimurium phage type DT104 has become a widespread cause of human and other animal infection worldwide. The severity of clinical illness inS. enterica serovar Typhimurium DT104 outbreaks has led to the suggestion that this strain possesses enhanced virulence. In the present study, in vitro and in vivo virulence-associated phenotypes of several clinical isolates of S. enterica serovar Typhimurium DT104 were examined and compared to S. entericaserovar Typhimurium ATCC 14028s. The ability of these DT104 isolates to survive within murine peritoneal macrophages, invade cultured epithelial cells, resist antimicrobial actions of reactive oxygen and nitrogen compounds, and cause lethal infection in mice were assessed. Our results failed to demonstrate that S. enterica serovar Typhimurium DT104 isolates are more virulent than S. enterica serovar Typhimurium ATCC 14028s.

scholarly journals Prevalence and Genetic Properties of Salmonella enterica Serovar Typhimurium Definitive Phage Type 104 Isolated from Rattus norvegicus and Rattus rattus House Rats in Yokohama City, Japan

2007 ◽  
Vol 73 (8) ◽  
pp. 2624-2630 ◽  
Author(s):  
Eiji Yokoyama ◽  
Soichi Maruyama ◽  
Hidenori Kabeya ◽  
Siro Hara ◽  
Shin Sata ◽  
...  
Keyword(s):  
Rattus Norvegicus ◽  
Gel Electrophoresis ◽  
Salmonella Enterica ◽  
Salmonella Enterica Serovar Typhimurium ◽  
Phage Type ◽  
Rattus Rattus ◽  
Pulsed Field Gel Electrophoresis ◽  
Intestinal Contents ◽  
Serovar Typhimurium ◽  
J 24

ABSTRACT Salmonella enterica serovar Typhimurium was isolated from the intestinal contents of Rattus rattus and Rattus norvegicus house rats captured at two buildings, designated buildings J and YS, in Yokohama City, Japan. From October 1997 to September 1998, 52 of 339 (15.3%) house rats were found to carry Salmonella serovar Typhimurium definitive phage type 104 (DT104). In building J, 26 of 161 (16.1%) house rats carried DT104 over the 1-year study period, compared to 26 of 178 (14.6%) rats in building YS. The isolation rates of DT104 from R. rattus and R. norvegicus were similar in the two buildings. Most DT104 strains from building J (24 of 26) showed resistance to ampicillin, chloramphenicol, streptomycin, sulfisoxazole, and tetracycline and contained both the 1.0- and 1.2-kbp integrons, carrying genes pse1, pasppflo-like, aadA2, sulI, and tet(G). All DT104 strains from building YS were resistant to ampicillin and sulfisoxazole, and had the 1.2-kbp integron carrying pse1 and sulI. Cluster analysis of pulsed-field gel electrophoresis patterns of BlnI-digested DT104 DNAs showed that 22 of 26 DT104 strains from building J and 24 of 26 strains from building YS could be grouped into separate clusters each specific for the building origin. These results indicated that DT104 strains were prevalent in house rat colonies in each building and suggest that house rats may play an important role in the epidemiology of DT104.

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