Problems with a conformation assignment of aryl-substituted resorc[4]arenes

2011 ◽  
Vol 76 (10) ◽  
pp. 1199-1222 ◽  
Author(s):  
Jakub Kaminský ◽  
Hana Dvořáková ◽  
Jan Štursa ◽  
Jitka Moravcová

Acid-catalyzed condensation of resorcinol with 3,5-diisopropoxybenzaldehyde and 3,5-dihydroxybenzaldehyde afforded aryl substituted resorc[4]arenes 1a and 1b, respectively. All 16 hydroxyls in 1b were acetylated providing resorc[4]arene 1c. The conformational behaviour of 1a, 1b and 1c was studied by NMR spectroscopy and quantum chemical calculations. It was found that the stabilization of their conformations is an effect of competing π-π and OH-π interactions, hydrogen bonding and steric features, respectively. As a result, C2 symmetrical boat conformations 1a, 1b and 1c with aryls in axial positions were identified in all cases. In case of 1c also the formation of C2 symmetrical conformation with aryls in equatorial positions (boat-eq) was identified. Moreover, compounds 1a and 1b being able to create hydrogen bonds, adopt also symmetrical C4 crown conformations. For 1c(boat-ax), the boat-boat conversion with energy barrier of 80 kJ/mol was observed, while the 1c(boat-eq) was found to be rigid in the whole accessible temperature range. Both conformers of 1c exhibit also second dynamic process – rotation of bridge aryl rings (ΔG‡ = 66 kJ/mol).

2013 ◽  
Vol 117 (15) ◽  
pp. 4109-4120 ◽  
Author(s):  
João M. M. Araújo ◽  
Ana B. Pereiro ◽  
José N. Canongia Lopes ◽  
Luís P. N. Rebelo ◽  
Isabel M. Marrucho

ChemPhysChem ◽  
2005 ◽  
Vol 6 (2) ◽  
pp. 315-327 ◽  
Author(s):  
Martin Schulz-Dobrick ◽  
Thorsten Metzroth ◽  
Hans Wolfgang Spiess ◽  
J�rgen Gauss ◽  
Ingo Schnell

2018 ◽  
Vol 54 (70) ◽  
pp. 9785-9788 ◽  
Author(s):  
Guanjun Chang ◽  
Yan Wang ◽  
Cheng Wang ◽  
Yannan Li ◽  
Yewei Xu ◽  
...  

We have successfully constructed a new type of recyclable indole-based hydrogel, which exhibited highly effective extraction behavior for hydroxide via the synergistic effect of cation–π interactions and hydrogen bonds.


Author(s):  
Jelena M. Andrić ◽  
Ivana M. Stanković ◽  
Snežana D. Zarić

The interactions of nucleic acid bases with non-coordinated and coordinated water molecules were studied by analyzing data in the Protein Data Bank (PDB) and by quantum chemical calculations. The analysis of the data in the crystal structures from the PDB indicates that hydrogen bonds involving oxygen or nitrogen atoms of nucleic acid bases and water molecules are shorter when water is bonded to a metal ion. These results are in agreement with the quantum chemical calculations on geometries and interaction energies of hydrogen bonds; the calculations on model systems show that hydrogen bonds of nucleic acid bases with water bonded to a metal ion are stronger than hydrogen bonds with non-coordinated water. These calculated values are similar to the strength of hydrogen bonds between nucleic acid bases. The results presented in this paper may be relevant to understand the role of water molecules and metal ions in the process of replication and stabilization of nucleic acids and also to understand the possible toxicity of metal ion interactions with nucleic acids.


RSC Advances ◽  
2016 ◽  
Vol 6 (55) ◽  
pp. 49651-49660 ◽  
Author(s):  
Satoko Hayashi ◽  
Yuji Sugibayashi ◽  
Waro Nakanishi

The nature of π-interactions in (EH2)n–*–π(C10H8) (n = 1 and 2: E = O, S, Se and Te) is elucidated with QTAIM-DFA. They have the character of the vdW-nature of the pure-CS interactions, except for HHTe–*–π(C10H8), which seems stronger than others.


2015 ◽  
Vol 17 (37) ◽  
pp. 24282-24293 ◽  
Author(s):  
V. V. Varfolomeeva ◽  
A. V. Terentev

The present paper discusses the contemporary state of the studies of the weak hydrogen bond contribution to the adsorption of flexible molecules. We formulated the problems which can be solved today only using the NCI method and quantum chemical calculations.


Author(s):  
Franc Perdih

The title compounds, [Cu(C5H7O2)2(C5H6N2)], (I), and [Cu(C5H7O2)2(C4H5N3)], (II), were prepared by the reaction of bis(pentane-2,4-dionato-κ2O,O′)copper(II) with pyridin-2-amine and pyrimidin-2-amine, respectively. From a chemical point of view, it is interesting that no Schiff base formation was observed. The compounds are isostructural, with both having a square-pyramidal coordination of the CuIIatom and intramolecular N—H...O hydrogen bonding. The additional N atom of the pyrimidin-2-amine ligand is not involved in hydrogen bonding or in metal coordination. In the crystal structure, chelate rings are involved in π–π interactions and molecules of (I) are linked togetherviaN—H...O hydrogen bonds.


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