Tuning of the Cavity of Water-Soluble Thiacalix[4]arene for the Control of Inclusion Ability Toward Water-Miscible Organic Molecules

2004 ◽  
Vol 69 (5) ◽  
pp. 1080-1096 ◽  
Author(s):  
Noriyoshi Kon ◽  
Nobuhiko Iki ◽  
Yuichiro Sano ◽  
Satoshi Ogawa ◽  
Chizuko Kabuto ◽  
...  
Keyword(s):  
Guest Molecule ◽  
Organic Molecules ◽  
Hydrophobic Effect ◽  
Binding Constants ◽  
Water Soluble ◽  
Main Role ◽  
Diethyl Ketone ◽  
Guest Molecules ◽  
X Ray ◽  
H Nmr

Inclusion abilities of water-soluble thiacalix[4]arenetetrasulfonate (3) and mono-O-carboxymethylated derivatives 5 and 6 toward water-miscible organic molecules such as alcohols, ketones, and nitriles in water were investigated by 1H NMR. The limit chemical shift change of the guest upon inclusion in the host suggested that the hosts regioselectively encapsulate the guests from the side of aliphatic moiety. Large guests such as pentan-1-ol showed folding of the alkyl chain to be included inside the cavity. On the other hand, mono-O-substituted 6 included a guest molecule less deep in the cavity than 3 did. Binding constants (K) of 3 toward guest molecules increased with hydrophobicity of the guest, suggesting that hydrophobic effect plays a main role for the complexation. On the contrary, mono-O-carboxymethyl derivatives 5 and 6 showed the opposite dependency of stability on hydrophobicity; higher affinities toward less hydrophobic guests. Among the guests examined, the smallest entities such as CH3OH and CH3CN were best included in 5 with the highest binding constant ever reported (K > 102 M-1). It was concluded that introduction of the carboxymethyl group into one of the phenolic OH of thiacalix[4]arene led to tuning of the cavity shape for stereospecific inclusion of small guests. The tuning of cavity by the O-alkylation was actually confirmed by X-ray crystal analysis of a complex of 5 with diethyl ketone.

Investigation of the disorder of dibromo- and dichloromethane in their tri-ortho-thymotide clathrates using X-ray diffraction and solid-state 2H NMR spectroscopy

2011 ◽  
Vol 89 (7) ◽  
pp. 854-862
Author(s):  
Glenn A. Facey ◽  
Ilia Korobkov
Keyword(s):  
Solid State ◽  
Nmr Spectroscopy ◽  
Guest Molecule ◽  
Type B ◽  
X Ray Diffraction ◽  
Guest Molecules ◽  
X Ray ◽  
Twofold Axis ◽  
H Nmr ◽  
Heavy Atoms

The tri-ortho-thymotide (TOT) clathrates of dibromo- and dichloromethane were characterized by single crystal X-ray diffraction at 200 K and solid-state 2H NMR spectroscopy as a function of temperature. The host structure was found to be typical of other cage-type TOT clathrates. The X-ray results showed a substantial amount of disorder among the guest molecules. In both clathrates, multiple guest molecule positions could be modeled. The heavy atoms of all the guest molecule positions lie approximately in the same plane, with some out-of-plane distortion. The guest molecules were of two different types in positions symmetric about the crystallographic twofold rotation axis: type A guests, with carbon atoms well removed from the crystallographic twofold axis, and type B guests, with carbon atoms very close to the twofold axis. The 2H NMR spectra for the guests confirmed that the disorder was dynamic. The experimental results could be accounted for by the presence of three simultaneous types of molecular motion, all fast with respect to the 2H quadrupolar interaction: (i) twofold molecular flips about the molecular C2 symmetry axis, (ii) exchange between the type A and type B sites in a single plane, and (iii) a two-site libration of the plane containing the heavy atoms of the A and B guest sites with a temperature-dependent amplitude.

A spectral displacement study of cyclodextrin/naphthenic acids inclusion complexes

2009 ◽  
Vol 87 (12) ◽  
pp. 1747-1756 ◽  
Author(s):  
Mohamed H. Mohamed ◽  
Lee D. Wilson ◽  
John V. Headley ◽  
Kerry M. Peru
Keyword(s):  
Guest Molecule ◽  
Hydrophobic Effect ◽  
Relative Size ◽  
Binding Constants ◽  
Naphthenic Acids ◽  
Single Component ◽  
Complex Mixtures ◽  
Complex Stability ◽  
Guest Molecules ◽  
Equilibrium Binding

The spectral displacement technique has been used to obtain 1:1 β-cyclodextrin (β-CD)/carboxylate anion equilibrium binding constants (K2) for some complex mixtures of naphthenic acids (NAs) and some examples of single-component NAs in aqueous solution. Three specific examples of single-component NAs were chosen with variable Z values as follows: 2-hexyldecanoic acid (Z = 0; S1), trans-4-pentylcyclohexanecarboxylic acid (Z = –2; S2), and dicyclohexylacetic acid (Z = –4; S3). The estimated K2 values for S1, S2, and S3 are as follows: 1.42 × 103 M–1, 52.2 × 104 M–1, and 13.1 × 104 M–1, respectively. The corresponding K2 values are 2.34 × 104 M–1 and 1.27 × 104 M–1 for commercial (Fluka) and industrial (Syncrude) sourced NAs, respectively. The magnitude of K2 for 1:1 complexes formed between β-CD and S1, S2, or S3 did not correlate with the degree of hydrogen deficiency (Z-series) but there was a correlation with the size of the guest molecules (n) examined in this study. The correlation between complex stability and the relative size of the lipophilic fragments of the guest molecule are related to the importance of the hydrophobic effect for inclusion of such carboxylic acid guest molecules within β-CD.

scholarly journals Interactions between 4-thiothymidine and water-soluble cyclodextrins: Evidence for supramolecular structures in aqueous solutions

2016 ◽  
Vol 12 ◽  
pp. 549-563 ◽  
Author(s):  
Vito Rizzi ◽  
Sergio Matera ◽  
Paola Semeraro ◽  
Paola Fini ◽  
Pinalysa Cosma
Keyword(s):  
Inclusion Complexes ◽  
Pyrimidine Ring ◽  
Protective Role ◽  
Supramolecular Structures ◽  
Water Soluble ◽  
Aqueous Environment ◽  
Spectroscopic Techniques ◽  
Guest Molecules ◽  
H Nmr ◽  
Cv Measurements

Since several years the inclusion of organic compounds (guests) within the hydrophobic cavity (host) of cyclodextrins (CDs) has been the subject of many investigations. Interestingly, the formation of inclusion complexes could affect the properties of the guest molecules and, for example, the influence of the delivery system can be a method to improve/change the photochemical behavior of the guest. In particular, very recent studies have shown the protective role of CDs preventing the degradation of the encapsulated guest. Starting from this consideration, in this work, only the structure and complexation mode of the inclusion complexes involving 4-thiothymidine (S4TdR, a known photosensitizer) and five CDs, namely 2-hydroxypropyl-α-cyclodextrin (2-HP-α-CD), 2-hydroxypropyl-β-cyclodextrin (2-HP-β-CD), 2-hydroxypropyl-γ-cyclodextrin (2-HP-γ-CD), heptakis-(2,6-di-O-methyl)-β-cyclodextrin (DIMEB CD) and heptakis-(2,3,6-tri-O-methyl)-β-cyclodextrin (TRIMEB CD) were investigated by different spectroscopic techniques (UV–vis, FTIR–ATR, 1H NMR) and cyclic voltammetry analysis (CV). This work is necessary for a prospective research on the photoreactivity of S4TdR in aqueous environment and in the presence of CDs to prevent its degradation under irradiation. UV–vis, FTIR–ATR and CV measurements suggested the formation of supramolecular structures involving the employed CDs and mainly the pyrimidine ring of S4TdR. 1H NMR analyses confirmed such indication, unveiling the presence of inclusion complexes. The strongest and deepest interactions were suggested when TRIMEB and DIMEB CDs were studied. The S4TdR affinity towards CDs was also evaluated by using the Benesi–Hildebrand (B–H) equation at 25 °C employing CV and 1H NMR methods. The stoichiometry of the interaction was also inferred and it appears to be 1:1 for all examined CDs.

Inclusion compounds of plant growth regulators in cyclodextrins. V. 4-Chlorophenoxyacetic acid encapsulated in β-cyclodextrin and heptakis(2,3,6-tri-O-methyl)-β-cyclodextrin

2005 ◽  
Vol 61 (2) ◽  
pp. 207-217 ◽  
Author(s):  
Frantzeska Tsorteki ◽  
Kostas Bethanis ◽  
Nikos Pinotsis ◽  
Petros Giastas ◽  
Dimitris Mentzafos
Keyword(s):  
Guest Molecule ◽  
Crystal Packing ◽  
Host Molecule ◽  
X Ray Diffraction ◽  
Guest Molecules ◽  
Space Group ◽  
X Ray ◽  
Dimeric Complexes ◽  
The Mean ◽  
Chlorophenoxyacetic Acid

The crystal structures of 4-chlorophenoxyacetic acid (4CPA) included in β-cyclodextrin (β-CD) and heptakis(2,3,6-tri-O-methyl)-β-cyclodextrin (TMβCD) have been studied by X-ray diffraction. The 4CPA/β-CD complex crystallizes as a head-to-head dimer in the space group C2 in the Tetrad packing mode. The packing modes of some β-CD dimeric complexes, having unique stackings, are also discussed. The 4CPA/TMβCD inclusion complex crystallizes in the space group P21 and its asymmetric unit contains two crystallographically independent complexes, complex A and complex B, exhibiting different conformations. The host molecule of complex A is significantly distorted, as a glucosidic residue rotated about the O4′—C1 and C4—O4 bonds forms an aperture where the guest molecule is accommodated. The phenyl moiety of the guest molecule of complex B is nearly perpendicular to the mean plane of the O4n atoms. The conformations of the guest molecules of the two complexes are similar. The crystal packing consists of antiparallel columns as in the majority of the TMβCD complexes published so far.

Adsorption behaviour of a CdII–triazole MOF for butan-2-one in a single-crystal-to-single-crystal (SCSC) fashion: the role of hydrogen bonding and C—H...π interactions

2019 ◽  
Vol 75 (6) ◽  
pp. 806-811
Author(s):  
Jia Wang ◽  
Tianchao You ◽  
Teng Wang ◽  
Qikui Liu ◽  
Jianping Ma ◽  
...  
Keyword(s):  
Hydrogen Bonding ◽  
Single Crystal ◽  
Specific Binding ◽  
Supramolecular Interactions ◽  
Adsorption Behaviour ◽  
X Ray Diffraction ◽  
Guest Molecules ◽  
X Ray ◽  
Π Interactions ◽  
H Nmr

The adsorption behaviour of the CdII–MOF {[Cd(L)2(ClO4)2]·H2O (1), where L is 4-amino-3,5-bis[3-(pyridin-4-yl)phenyl]-1,2,4-triazole, for butan-2-one was investigated in a single-crystal-to-single-crystal (SCSC) fashion. A new host–guest system that encapsulated butan-2-one molecules, namely poly[[bis{μ3-4-amino-3,5-bis[3-(pyridin-4-yl)phenyl]-1,2,4-triazole}cadmium(II)] bis(perchlorate) butanone sesquisolvate], {[Cd(C24H18N6)2](ClO4)2·1.5C4H8O} n , denoted C4H8O@Cd-MOF (2), was obtained via an SCSC transformation. MOF 2 crystallizes in the tetragonal space group P43212. The specific binding sites for butan-2-one in the host were determined by single-crystal X-ray diffraction studies. N—H...O and C—H...O hydrogen-bonding interactions and C—H...π interactions between the framework, ClO4 − anions and guest molecules co-operatively bind 1.5 butan-2-one molecules within the channels. The adsorption behaviour was further evidenced by 1H NMR, IR, TGA and powder X-ray diffraction experiments, which are consistent with the single-crystal X-ray analysis. A 1H NMR experiment demonstrates that the supramolecular interactions between the framework, ClO4 − anions and guest molecules in MOF 2 lead to a high butan-2-one uptake in the channel.

Determination of Relative Stability of Urea Complexes from X-Ray Powder Diffraction Data

1960 ◽  
Vol 4 ◽  
pp. 140-150 ◽  
Author(s):  
Jack Radell ◽  
J.W. Connolly
Keyword(s):  
Dissociation Constant ◽  
Guest Molecule ◽  
Interplanar Spacing ◽  
Dynamic Equilibrium ◽  
Crystalline Complex ◽  
Guest Molecules ◽  
X Ray ◽  
Host Molecules ◽  
The Stability

AbstractUrea complexes consist of a channel made up of hydrogen-bonded urea host molecules into which a variety of guest molecules can fit to form a crystalline complex. The urea host can accommodate, one at a time, a variety of guests having the requisite size and shape. The stability of the resulting complex is a function of the properties of the guest molecule. A procedure has been devised which produces pure complex free of any uncomplexed urea or host molecules in solution. The insoluble crystalline complexes formed from the solution of urea and guest molecule in methanol established a dynamic equilibrium. When the crystals of complex are removed from the solution, dissociation to urea and guest occurs to an extent, depending upon the dissociation constant of the complex. If the dissociation constant, KD, is very low, undetectable quantities of uncomplexed urea form along with complex. If the dlissoclation constant is high, extensive amounts of urea form in the presence of complex. Characteristic interplanar spacing s are obtained for a urea complex irrespective of the guest molecule present. The pattern obtained for the hexagonal complex is completely different from the pattern obtained for tetragonal urea. X-ray examination of a homologous series of compounds gives, for each partially dissociated complex, spacings for both urea and complex. The relative intensities of urea and complex spacings permit the estimation of the stability of such a complex compared to that of other homologues.

Structural Transition of Trimethylamine Hydrate by Methane or Hydrogen Inclusion

2020 ◽  
Author(s):  
Minjun Cha
Keyword(s):  
Structural Transition ◽  
Guest Molecule ◽  
Clathrate Hydrate ◽  
Hydrogen Gas ◽  
Time Dependent ◽  
X Ray Diffraction ◽  
Guest Molecules ◽  
X Ray ◽  
Inclusion Process ◽  
Diffraction Patterns

<p>Recently, several alkylamine hydrates have been studied in an effort to reveal the structural transitions from semi- to ‘canonical’ clathrate hydrate in the presence of secondary guest molecules. Trimethylamine (TMA) is known to form the semi-clathrate hydrate, and it has been reported that the structural transition of the TMA semi-clathrate hydrate may not occur in the presence of hydrogen gas as a secondary guest molecule. This paper reports the structural transition of trimethylamine(TMA) hydrate induced by the type of guest molecules. Powder X-ray diffraction patterns of (TMA + H<sub>2</sub>) hydrates show the formation of hexagoanl P6/mmm hydrate, but those of (TMA + CH<sub>4</sub>) hydrates indicate the formation of cubic Fd3m hydrate. Without gaseous guest molecule, the crystal structure of pure TMA hydrate is identified as hexagonal P6/mmm. Therefore, inclusion of gaseous methane in TMA hydrate can induce the structural transition from hexagonal to cubic hydrate or the formation of metastable cubic hydrate. To clearly reveal this possibility, we also check the time-dependent structural patterns of binary (TMA + CH<sub>4</sub>) hydrates from 1 to 14 days, and the results show that the structural transition of TMA hydrate from hexagonal P6/mmm to cubic Fd3m hydrate structure can occur during the methane inclusion process.</p>

scholarly journals Synthesis, Characterization, and BSA-Binding Studies of Novel Sulfonated Zinc-Triazine Complexes

2018 ◽  
Vol 2018 ◽  
pp. 1-7 ◽  
Author(s):  
Nalin Abeydeera ◽  
Inoka C. Perera ◽  
Theshini Perera
Keyword(s):  
Bathochromic Shift ◽  
Binding Constants ◽  
Disodium Salt ◽  
Water Soluble ◽  
Disulfonic Acid ◽  
Binding Studies ◽  
H Nmr ◽  
Acid Sodium Salt ◽  
Vis Spectroscopy ◽  
Chemical Formulas

Four Zn(II) complexes containing a pyridyl triazine core (L1 = 3-(2-pyridyl)-5,6-di(2-furyl)-1,2,4-triazine-5′,5″-disulfonic acid disodium salt and L2 = 3-(2-pyridyl)-5,6-diphenyl-1,2,4-triazine-4′,4″-disulfonic acid sodium salt) were synthesized, and their chemical formulas were finalized as [Zn(L1)Cl2]·5H2O·ZnCl2 (1), [Zn(L1)2Cl2]·4H2O·2CH3OH (2), [Zn(L2)Cl2]·3H2O·CH3OH (3), and [Zn(L2)2Cl2] (4). The synthesized complexes are water soluble, making them good candidates for biological applications. All four complexes have been characterized by elemental analysis and 1H NMR, IR, and UV-Vis spectroscopy. The IR stretching frequency of N=N and C=N bonds of complexes 1–4 have shifted to lower frequencies in comparison with free ligands, and a bathochromic shift was observed in UV-Vis spectra of all four complexes. The binding studies of ligands and complexes 1–4 with bovine serum albumin (BSA) resulted binding constants (Kb) of 3.09 × 104 M−1, 12.30 × 104 M−1, and 16.84 × 104 M−1 for ferene, complex 1, and complex 2, respectively, indicating potent serum distribution via albumins.

Tungsten and molybdenum oxo complexes of tetrakis(phenyldiazenyl)calix[4]arene substituted derivatives: EHMO calculations, spectroscopic characterization, and perturbations of the photophysical properties by neutral guest molecules

1996 ◽  
Vol 74 (11) ◽  
pp. 2279-2288 ◽  
Author(s):  
Pierre D. Harvey ◽  
Jonathan Gagnon ◽  
Réjean Provencher ◽  
Bing Xu ◽  
Timothy M. Swager
Keyword(s):  
Excited States ◽  
Photophysical Properties ◽  
Binding Constants ◽  
Spectroscopic Characterization ◽  
Guest Molecules ◽  
H Nmr ◽  
Oxo Complexes ◽  
Visible Luminescence ◽  
Uv Visible ◽  
Host Chemistry

Bowl-shaped chromophores fabricated with tungsten and molybdenum oxo complexes of calix[4]arenes substituted at the para positions with phenyldiazenyl (R2C6H3N2) derivatives are investigated. The nature of the lowest energy excited states has been addressed theoretically using Extended Hückel Molecular Orbital (EHMO) calculations and experimentally using UV-visible, luminescence, and polarized emission spectroscopy at 77 K. The lowest energy excited states are intraligand (azobenzene fragment) ππ* (S2 and T2) and ππ*states (S1, and T1). The compounds are weakly luminescent in the 600–630 nm range exhibiting emissions arising from the 1(ππ*) states [Formula: see text]. The region located above 900 nm was not investigated. Evidence for guest–host chemistry has been demonstrated by1H-NMR spectroscopy, and the binding constants for two of the compounds with pyridine in toluene as a solvent were obtained by UV–visible spectroscopy. The presence of a guest molecule inside the luminescent metal oxo complex of a calix[4]arene hosts decreases the emission lifetimes.Key words: host–guest, photophysics, calix[4]arene, EHMO, fluorescence

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