The Crystal and Molecular Structure of sym-fac-(1,4,7-Triazaheptane)-(S)-aspartatocobalt(III) Diperchlorate Dihydrate

1994 ◽  
Vol 59 (5) ◽  
pp. 1052-1058 ◽  
Author(s):  
Jan Ondráček ◽  
Jana Ondráčková ◽  
Jaroslav Maixner ◽  
František Jursík
Keyword(s):  
Molecular Structure ◽  
Aspartic Acid ◽  
Crystal And Molecular Structure ◽  
Heavy Atom ◽  
Membered Ring ◽  
Boat Conformation ◽  
Hydrogen Atoms ◽  
Orthorhombic System ◽  
Anisotropic Temperature ◽  
Heavy Atom Method

The crystal and molecular structure of s-fac-[Co((S)-Asp)(dien)]ClO4 . HClO4 .2 H2O (dien = 1,4,7-triazaheptane) was solved by the heavy atom method. The position parameters of the non-hydrogen atoms and their anisotropic temperature parameters were refined based on 1 726 observed reflections with a final value of R = 0.073. The substance crystallizes in the orthorhombic system in the space group P212121, Z = 4, a = 8.506(1), b = 17.171(2), c = 13.277(1) Å. The structure involves hydrogen bonds between the O2, O4 and HN2 atoms of aspartic acid and the two molecules of water. The five-membered dien chelate rings take the asymmetric envelope conformations. The five-membered ring of (S)-aspartic acid possesses the symmetric envelope conformation whereas the six-membered ring exhibits the skew boat conformation.

The crystal and molecular structure of configurationally chiral unsym-fac-[N-(2-aminoethyl)-1,3-diaminopropane-(S)-aspartato]cobalt(III) perchlorate with dominating vicinal effect in its circular dichroism

1989 ◽  
Vol 54 (12) ◽  
pp. 3220-3229
Author(s):  
Jan Ondráček ◽  
Jaroslav Maixner ◽  
Bohumil Kratochvíl ◽  
Jana Ondráčková ◽  
František Jursík
Keyword(s):  
Molecular Structure ◽  
Crystal And Molecular Structure ◽  
Chelate Ring ◽  
Heavy Atom ◽  
Membered Ring ◽  
Cd Spectra ◽  
Hydrogen Atoms ◽  
Orthorhombic System ◽  
Anisotropic Temperature ◽  
Heavy Atom Method

The crystal and molecular structure of unsym1-fac-Λ-(δ, chair)-(S)-[Co(aepn)(S)-Asp]ClO4(trans-6,6) was solved by the heavy atom method. The positions of the non-hydrogen atoms and their anisotropic temperature parameters were refined on the basis of 1 935 observed reflections, yielding values of R = 0.121 and wR = 0.117, affected by the undertermined position of the oxygen atoms in the ClO4-> anion. The substance crystallizes in the orthorhombic system with space group P212121; Z = 4, a = 9.664(1), b = 11.805(1), c = 13.966(2) Å. The secondary atom of the triamine has S configuration, the conformation of the five-membered chelate ring approaches that of the asymmetrical δ envelope and the six-membered ring has chair configuration. Both conformations are deformed. The donor atoms deviate from the defined planes and thus form further sources of chirality (λ) contributing to the optical activity of the isomer. These deviations lead to the similarity of the CD spectra of the isomers.

Crystal and Molecular Structure of the s-fac-[Co((S)-Asp)(medien)]ClO4 . H2O . HClO4 Isomer

1993 ◽  
Vol 58 (2) ◽  
pp. 335-342 ◽  
Author(s):  
Jan Ondráček ◽  
Jaroslav Maixner ◽  
Jana Ondráčková ◽  
František Jursík
Keyword(s):  
Molecular Structure ◽  
Crystal And Molecular Structure ◽  
Chelate Ring ◽  
Complex Cation ◽  
Heavy Atom ◽  
Boat Conformation ◽  
Membered Chelate Ring ◽  
Anisotropic Temperature ◽  
Hydroxonium Cation ◽  
Heavy Atom Method

The crystal and molecular structure of s-fac-[Co((S)-Asp)(medien)]ClO4 . H2O . HClO4 was elucidated by the heavy atom method. The positional parameters of the nonhydrogen atoms and their anisotropic temperature parameters were refined based on 2 474 observed reflection with final values of R = 0.0603 and wR = 0.0616. The substance crystallized in the orthorhombic system in the space group P212121, Z = 4, a = 8.536(1), b = 13.378(1), c = 16.899(2) Å. The structure comprises layers of the complex cation which alternate with layers containing two perchlorate anions and one hydroxonium cation. The five-membered chelate ring of 4-methyl-1,4,7-triazaheptane exist in the asymmetric λ, δ envelope conformations and the N-CH3 group of the triamine has the exo orientation. The five-membered ring of (S)-aspartic acid assumes the symmetric envelope conformation, the six-membered chelate ring, the skew boat conformation.

Crystal and molecular structure of the m-bromobenzoate derivative of bisnorquassin

1970 ◽  
Vol 48 (2) ◽  
pp. 307-311 ◽  
Author(s):  
H. Lynton
Keyword(s):  
Molecular Structure ◽  
Crystal And Molecular Structure ◽  
Heavy Atom ◽  
Unit Cell ◽  
Anisotropic Temperature ◽  
Cell Dimensions ◽  
Final Agreement ◽  
Unit Cell Dimensions ◽  
Heavy Atom Method ◽  
Atomic Parameters

The molecular structure of the m-bromobenzoate derivative of bisnorquassin, C27H27O7Br, has been determined by the heavy atom method. The compound crystallizes in the orthorhombic system, space group P212121, with unit cell dimensions a = 20.09 ± 0.02 Å, b = 14.63 ± 0.02 Å, c = 8.06 + 0.01 Å and 4 molecules in the unit cell. Final atomic parameters have been obtained from a blockdiagonal least-squares refinement using anisotropic temperature parameters. The final agreement residual for 1665 observed reflections is R = 0.107.The structure of bisnorquassin previously proposed by Findlay and Cropp, on the basis of spectroscopic and chemical evidence, is shown to be essentially correct.

Flukicides. IV. Crystal and Molecular Structure of 3'-Chloro-4'(p-chlorophenoxy)-3,5-diiodo-salicylanilide (Rafoxanide)

1980 ◽  
Vol 33 (1) ◽  
pp. 203 ◽  
Author(s):  
A Sindt ◽  
M Mackay
Keyword(s):  
Crystal And Molecular Structure ◽  
Heavy Atom ◽  
Carbonyl Oxygen ◽  
Aromatic Rings ◽  
Hydrogen Atoms ◽  
Molecular Hydrogen Bond ◽  
Anisotropic Temperature ◽  
Orthorhombic Crystals ◽  
Temperature Factors ◽  
Heavy Atom Method

Orthorhombic crystals of rafoxanide, C19H11Cl2I2NO3, belong to the space group Pca21 with a 23.234(2), b 8.980(2), c 9.582(2)Ǻ and Z 4. The structure was solved by the heavy-atom method from diffractometer data measured with Mo Kα radiation. Refinement with anisotropic temperature factors given to the non-hydrogen atoms converged at R 0.059 for the 2025 observed terms. The two aromatic rings of the salicylanilide moiety are almost coplanar with a dihedral angle of 11.2°, whereas they are approximately perpendicular to the plane of the phenoxy group. Weak inter-molecular hydrogen-bond-like interactions between the nitrogen and carbonyl oxygen, which involve a glide motif, link the molecules into ribbons extending along the c axis.

The crystal and molecular structure of cobalt(III) sym-fac-N-(2-aminoethyl)-1,3-diaminopropane-(S)-aspartate perchlorate, sym-fac-[Co-(aepn)(S)-Asp]ClO4

1987 ◽  
Vol 52 (4) ◽  
pp. 949-956 ◽  
Author(s):  
Bohumil Kratochvíl ◽  
Jan Ondráček ◽  
Jana Ondráčková ◽  
Jiřina Soldánová ◽  
František Jursík ◽  
...  
Keyword(s):  
Molecular Structure ◽  
Crystal And Molecular Structure ◽  
Structural Parameters ◽  
Heavy Atom ◽  
Chair Conformation ◽  
Elementary Cell ◽  
Membered Ring ◽  
Reliability Factor ◽  
Anisotropic Temperature ◽  
Temperature Factors

The crystal and molecular structure of sym-fac-[Co-(aepn) (S)-Asp]ClO4 was solved by the heavy atom method. The positions of the nonhydrogen atoms and their anisotropic temperature factors were refined. On the basis of 1 514 observed reflection intensities, a final reliability factor value of R = 0.096 was obtained (wR = 0.101). The substance crystallizes in the orthorhombic system in the P212121 space group. The elementary cell contains four formula units and has dimensions of a = 704.0(6), b = 939.4(7), c = 2 369(2) pm. The secondary nitrogen atom of the triamine has S confuguration. The five-membered ring has the λ conformation and the six-membered ring the flattened chair conformation. Selected structural parameters indicate that facial coordination of N-2-aminoethyl-1,3-diaminopropane leads to decreased strain in the coordinated, slightly deformed octahedron than meridional coordination and also that the chelate rings of the triamine are conformationally dependent. The bond lengths and angles of the part formed by (S)-aspartic acid agree with the corresponding values in [Co-((S)-Asp)2]-.

Determination of the structure of bis(propyldithiocarbamate)nickel(II)

1990 ◽  
Vol 55 (4) ◽  
pp. 1010-1014 ◽  
Author(s):  
Jiří Kameníček ◽  
Richard Pastorek ◽  
František Březina ◽  
Bohumil Kratochvíl ◽  
Zdeněk Trávníček
Keyword(s):  
Molecular Structure ◽  
Title Compound ◽  
Crystal And Molecular Structure ◽  
Heavy Atom ◽  
Unit Cell ◽  
Monoclinic Space Group ◽  
Planar Configuration ◽  
Compound C ◽  
Heavy Atom Method

The crystal and molecular structure of the title compound (C8H16N2NiS4) was solved by the heavy atom method and the structure was refined anisotropically to a final R factor of R = 0.029 (wR = 0.037) for 715 observed reflections. The crystal is monoclinic, space group P21/c with a = 948.3(2), b = 776.9(2), c = 1 167.4(2) pm, β = 125.14(2)°, Z = 2. The molecule contains two four-membered NiSCS rings of approximately planar configuration with the Ni atom situated at a centre of symmetry. The molecules are arranged in chains along the c-axis of the unit cell.

scholarly journals The crystal and molecular structure of the bis(N,N,N′,N′-tetramethylethanediamine) adduct of I(Br)InInBr2, In2Br3I•2C6H16N2, an indium–indium bonded molecule

1984 ◽  
Vol 62 (3) ◽  
pp. 601-605 ◽  
Author(s):  
Masood A. Khan ◽  
Clovis Peppe ◽  
Dennis G. Tuck
Keyword(s):  
Molecular Structure ◽  
Crystal Structure ◽  
Crystal And Molecular Structure ◽  
Heavy Atom ◽  
Orthorhombic Space Group ◽  
Trigonal Bipyramidal ◽  
Cell Dimensions ◽  
Unit Cell Dimensions ◽  
Heavy Atom Method ◽  
Distorted Trigonal Bipyramidal

The crystal structure of the title compound has been determined by the heavy atom method. The crystals are orthorhombic, space group Pbca, with unit cell dimensions a = 22.795(3) Å, b = 17.518(2) Å, c = 12.396(3) Å, Z = 8; R = 0.0409 for 1527 unique "observed" reflections. The structure is disordered, with each halogen site (X) occupied by 75% Br, 25% I. The molecule consists of two X2(tmen)In units (tmen = N,N,N′,N′-tetramethylethanediamine) with distorted trigonal bipyramidal geometry, joined by an In—In bond 2.775(2) Å in length.

Crystal and Molecular Structure of Dithiocyanato(triphenylarsine)mercury(II)

1975 ◽  
Vol 53 (22) ◽  
pp. 3383-3387 ◽  
Author(s):  
Joseph Hubert ◽  
André L. Beauchamp ◽  
Roland Rivest
Keyword(s):  
Molecular Structure ◽  
Least Squares ◽  
Coordination Number ◽  
Diffraction Data ◽  
Crystal And Molecular Structure ◽  
Heavy Atom ◽  
Monoclinic Space Group ◽  
X Ray Diffraction ◽  
X Ray ◽  
Heavy Atom Method

The crystal and molecular structure of dithiocyanato(triphenylarsine)mercury(II) has been determined from X-ray diffraction data. The crystals are monoclinic, space group P21/c, with a = 10.290(7), b = 21.199(23), c = 10.719(7) Å, β = 112.00(2)°, and Z = 4. The structure has been solved by the heavy-atom method and refined by block-diagonal least-squares calculations. The agreement factor R obtained for 2607 'observed' reflections is 0.030. The crystal consists of single molecules. The 'characteristic' coordination number of mercury is three, with two sulfur and one arsenic atoms at the apexes of a triangle. The nitrogen atoms of the thiocyanate groups are at 2.67 and 2.74 Å from the adjoining mercury atoms and therefore link the different molecules together.

The crystal and molecular structure of streptomycin oxime selenate tetrahydrate

1978 ◽  
Vol 359 (1698) ◽  
pp. 365-388 ◽  
Keyword(s):  
Molecular Structure ◽  
Crystal And Molecular Structure ◽  
Heavy Atom ◽  
Water Molecules ◽  
Monoclinic Space Group ◽  
Hydrogen Atoms ◽  
Glycosidic Bonds ◽  
Compound C ◽  
Cell Dimensions ◽  
Network Of Hydrogen Bonds

The crystal and molecular structure and absolute configuration of the antibiotic streptomycin have been determined by an X-ray study of the hydrated oxime selenate. The compound (C 21 H 40 N 8 O 12 . 1 1/2 H 2 SeO 4 .4H 2 O) crystallizes in the monoclinic space group C 2, with cell dimensions a = 17.10(1), b = 14.36(1), c = 16.13(1)Å∥, β = 108.0(2)°; Z = 4 The structure was solved by the heavy-atom method, by using 3236 visually-estimated intensities, and refined to a conventional R of 0.086. The analysis has confirmed that streptomycin consists of three fragments, an N -methyl- α-L-glucosamine ring, an α-L-streptose and a streptidine ring, linked together by two glycosidic bonds. The crystal structure contains an elaborate network of hydrogen bonds linking selenate and streptomycin oxime ions and water molecules, analysis of which, though somewhat hampered by inability to observe the hydrogen atoms experimentally, reveals a disordered hydrogen bond occurring between two diad-related water molecules.

Crystal and molecular structure of the tetradecahydrate of cobalt(II) (R,S)-ethylenediamine-N,N'-disuccinato-cobaltate(III)

1980 ◽  
Vol 45 (6) ◽  
pp. 1766-1774 ◽  
Author(s):  
František Pavelčík ◽  
Jiřina Soldánová ◽  
Jaroslav Majer
Keyword(s):  
Molecular Structure ◽  
Oxygen Atom ◽  
Least Squares Method ◽  
Crystal And Molecular Structure ◽  
Heavy Atom ◽  
Cobalt Atom ◽  
Carboxyl Groups ◽  
Water Molecules ◽  
Crystal Water ◽  
Heavy Atom Method

Crystals of Co3((R,S)-EDDS)2 . 14 H2O are monoclinic with lattice parameters a = 1.1393, b = 1.1856, c = 1.5267 nm, β = 114.6°. The space group is P21/c, Z = 2. The structure was solved by the heavy atom method and refined by the least squares method to R = 0.082. The crystals are composed of binuclear [CO2((R,S-EDDS)2]2- anions, [CO(OH2)6]2+ cations and crystal water molecules. The cobalt atom in [Co2((R,S)-EDDS)2]2- is coordinated octahedrally by two nitrogen atoms and three oxygen atoms from different carboxyl groups in a single [(R,S)-EDDS]4- molecule and one oxygen atom from a neighbouring [(R,S)-EDDS]4- molecule. The [Co(OH2)6]2+ cation is coordinated octahedrally.

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