In VivoGene Essentiality and Metabolism inBordetella pertussis
ABSTRACTBordetella pertussisis the causative agent of whooping cough, a serious respiratory illness affecting children and adults, associated with prolonged cough and potential mortality. Whooping cough has reemerged in recent years, emphasizing a need for increased knowledge of basic mechanisms ofB. pertussisgrowth and pathogenicity. While previous studies have provided insight intoin vitrogene essentiality of this organism, very little is known aboutin vivogene essentiality, a critical gap in knowledge, sinceB. pertussishas no previously identified environmental reservoir and is isolated from human respiratory tract samples. We hypothesize that the metabolic capabilities ofB. pertussisare especially tailored to the respiratory tract and that many of the genes involved inB. pertussismetabolism would be required to establish infectionin vivo. In this study, we generated a diverse library of transposon mutants and then used it to probe gene essentialityin vivoin a murine model of infection. Using the CON-ARTIST pipeline, 117 genes were identified as conditionally essential at 1 day postinfection, and 169 genes were identified as conditionally essential at 3 days postinfection. Most of the identified genes were associated with metabolism, and we utilized two existing genome-scale metabolic network reconstructions to probe the effects of individual essential genes on biomass synthesis. This analysis suggested a critical role for glucose metabolism and lipooligosaccharide biosynthesisin vivo. This is the first genome-wide evaluation ofin vivogene essentiality inB. pertussisand provides tools for future exploration.IMPORTANCEOur study describes the firstin vivotransposon sequencing (Tn-seq) analysis ofB. pertussisand identifies genes predicted to be essential forin vivogrowth in a murine model of intranasal infection, generating key resources for future investigations intoB. pertussispathogenesis and vaccine design.