scholarly journals Genome Sequence of Novosphingobium sp. Strain Rr 2-17, a Nopaline Crown Gall-Associated Bacterium Isolated from Vitis vinifera L. Grapevine

2012 ◽  
Vol 194 (18) ◽  
pp. 5137-5138 ◽  
Author(s):  
Han Ming Gan ◽  
Teong Han Chew ◽  
André O. Hudson ◽  
Michael A. Savka
Keyword(s):  
Vitis Vinifera ◽  
Genome Sequence ◽  
Crown Gall ◽  
Draft Genome ◽  
Homoserine Lactone ◽  
Vitis Vinifera L ◽  
Acyl Homoserine Lactone ◽  
Content Type ◽  
Crown Gall Tumor

ABSTRACTNovosphingobiumsp. strain Rr 2-17 is anN-acyl homoserine lactone (AHL)-producing bacterium isolated from the crown gall tumor of a grapevine. To our knowledge, this is the first draft genome announcement of a plant-associated strain from the genusNovosphingobium.

scholarly journals Draft Genome Sequence of Nitrobacter vulgaris Strain Ab1, a Nitrite-Oxidizing Bacterium

2017 ◽  
Vol 5 (18) ◽  
Author(s):  
Brett L. Mellbye ◽  
Edward W. Davis ◽  
Eva Spieck ◽  
Jeff H. Chang ◽  
Peter J. Bottomley ◽  
...  
Keyword(s):  
Quorum Sensing ◽  
Genome Sequence ◽  
Draft Genome ◽  
Homoserine Lactone ◽  
Draft Genome Sequence ◽  
Nitrifying Bacteria ◽  
Acyl Homoserine Lactone ◽  
Content Type ◽  
Sewage System ◽  
Nitrite Oxidizing Bacteria

ABSTRACT Here, we present the 3.9-Mb draft genome sequence of Nitrobacter vulgaris strain Ab1, which was isolated from a sewage system in Hamburg, Germany. The analysis of its genome sequence will contribute to our knowledge of nitrite-oxidizing bacteria and acyl-homoserine lactone quorum sensing in nitrifying bacteria.

scholarly journals Complete Genome Sequence of Pseudomonas putida Strain TS312, Harboring an HdtS-Type N-Acyl-Homoserine Lactone Synthase, Isolated from a Paper Mill

2020 ◽  
Vol 9 (13) ◽  
Author(s):  
Ayaka Hosoe ◽  
Toshikazu Suenaga ◽  
Takumi Sugi ◽  
Taro Iizumi ◽  
Naohiro Nagai ◽  
...  
Keyword(s):  
Pseudomonas Putida ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Paper Mill ◽  
Homoserine Lactone ◽  
Acyl Homoserine Lactone ◽  
Gene Encoding ◽  
Content Type ◽  
Engineered Systems

We report the complete genome sequence of Pseudomonas putida strain TS312, in the class of Gammaproteobacteria. The strain, isolated from a paper mill, harbors the hdtS gene, encoding N-acyl-homoserine lactone synthase. Deciphering the genome contributes to revealing the mechanisms of quorum sensing and associated biofilm formation in engineered systems.

scholarly journals Genome Sequence of Methylobacterium sp. Strain GXF4, a Xylem-Associated Bacterium Isolated from Vitis vinifera L. Grapevine

2012 ◽  
Vol 194 (18) ◽  
pp. 5157-5158 ◽  
Author(s):  
Han Ming Gan ◽  
Teong Han Chew ◽  
André O. Hudson ◽  
Michael A. Savka
Keyword(s):  
Vitis Vinifera ◽  
Genome Sequence ◽  
Sequence Assembly ◽  
Vitis Vinifera L ◽  
Content Type ◽  
Shed Light

ABSTRACTMethylobacteriumsp. strain GXF4 is an isolate from grapevine. Here we present the sequence, assembly, and annotation of its genome, which may shed light on its role as a grapevine xylem inhabitant. To our knowledge, this is the first genome announcement of a plant xylem-associated strain of the genusMethylobacterium.

scholarly journals Draft Genome Sequence of Agrobacterium tumefaciens Biovar 1 Strain 186, Isolated from Walnut

2017 ◽  
Vol 5 (46) ◽  
Author(s):  
Amisha T. Poret-Peterson ◽  
Srijak Bhatnagar ◽  
Ali E. McClean ◽  
Daniel A. Kluepfel
Keyword(s):  
Agrobacterium Tumefaciens ◽  
Genome Sequence ◽  
Crown Gall ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Gall Formation ◽  
Content Type ◽  
Walnut Tree ◽  
English Walnut

ABSTRACT Agrobacterium tumefaciens biovar 1 strain 186 was isolated from a walnut tree expressing crown gall symptoms. The draft genome sequence of this strain harbored genes for crown gall formation and will be useful for understanding its virulence on Paradox, the predominant hybrid rootstock used for the cultivation of English walnut in California.

scholarly journals Draft Genome Perspective of Staphylococcus saprophyticus Strain SU8, an N -Acyl Homoserine Lactone-Degrading Bacterium

2015 ◽  
Vol 3 (5) ◽  
Author(s):  
Kok-Gan Chan ◽  
Joanita Sulaiman ◽  
Delicia Ann Yong ◽  
Kok Keng Tee ◽  
Wai-Fong Yin ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Water Source ◽  
Quorum Quenching ◽  
Homoserine Lactone ◽  
Draft Genome Sequence ◽  
Acyl Homoserine Lactone ◽  
Staphylococcus Saprophyticus ◽  
Degrading Bacterium

Staphylococcus saprophyticus strain SU8 was isolated from a pristine water source in Malaysia and it exhibited degradation of N- hexanoylhomoserine lactone. Here we report the draft genome sequence of S. saprophyticus strain SU8 to further understand its quorum quenching abilities.

scholarly journals Genome Sequence of Serratia fonticola Strain S14, Isolated from the Mosquito Aedes triseriatus

2020 ◽  
Vol 9 (17) ◽  
Author(s):  
Shicheng Chen ◽  
Edward D. Walker
Keyword(s):  
Quorum Sensing ◽  
Genome Size ◽  
Genome Sequence ◽  
Homoserine Lactone ◽  
Acyl Homoserine Lactone ◽  
Aedes Triseriatus ◽  
Content Type ◽  
A Genome

The bacterium Serratia fonticola strain S14, isolated from the midgut of a female Aedes triseriatus mosquito, has a genome size of 6,176,978 bp. The genome includes genes responsible for acyl-homoserine lactone-mediated quorum sensing, enterobactin, and aerobactin.

scholarly journals Complete Genome Sequence of Agrobacterium tumefaciens 1D1609

2018 ◽  
Vol 6 (16) ◽  
pp. e00253-18 ◽  
Author(s):  
Shu-Ting Cho ◽  
Mindia Haryono ◽  
Hsing-Hua Chang ◽  
Mary Nia M. Santos ◽  
Erh-Min Lai ◽  
...  
Keyword(s):  
Agrobacterium Tumefaciens ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Crown Gall ◽  
Complete Genome ◽  
Virulent Strain ◽  
Content Type ◽  
Crown Gall Tumor ◽  
Future Studies ◽  
Highly Virulent

ABSTRACT Agrobacterium tumefaciens 1D1609 is a highly virulent strain isolated from a crown gall tumor of alfalfa (Medicago sativa L.). Compared to other well-characterized A. tumefaciens strains, such as C58 and Ach5, 1D1609 has a distinctive host range. Here, we report its complete genome sequence to facilitate future studies.

scholarly journals Draft Genome Sequence ofChromobacterium violaceumStrain CV017

2016 ◽  
Vol 4 (2) ◽  
Author(s):  
Xiaofei Wang ◽  
Kara C. Hinshaw ◽  
Stuart J. Macdonald ◽  
Josephine R. Chandler
Keyword(s):  
Quorum Sensing ◽  
Genome Sequence ◽  
Draft Genome ◽  
Homoserine Lactone ◽  
Chromobacterium Violaceum ◽  
Draft Genome Sequence ◽  
Acyl Homoserine Lactone

We announce the draft genome sequence forChromobacterium violaceumstrain CV017, used as a model and tool to understand acyl-homoserine lactone-dependent quorum sensing. The assembly consists of 4,774,638-bp contained in 211 scaffolds.

scholarly journals Draft Genome Sequence of Urease-Producing Pseudorhodobacter sp. Strain E13, Isolated from the Yellow Sea in Gunsan, South Korea

2019 ◽  
Vol 8 (23) ◽  
Author(s):  
Si Chul Kim ◽  
Hyo Jung Lee
Keyword(s):  
South Korea ◽  
Genome Sequence ◽  
Yellow Sea ◽  
Draft Genome ◽  
The Yellow Sea ◽  
Draft Genome Sequence ◽  
Protein Coding ◽  
Coding Sequences ◽  
Gram Negative ◽  
Content Type

Here, we report the draft genome sequence of Pseudorhodobacter sp. strain E13, a Gram-negative, aerobic, nonflagellated, and rod-shaped bacterium which was isolated from the Yellow Sea in South Korea. The assembled genome sequence is 3,878,578 bp long with 3,646 protein-coding sequences in 159 contigs.

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