scholarly journals Draft Genome Sequence of Wickerhamomyces ciferrii NRRL Y-1031 F-60-10

2012 ◽  
Vol 11 (12) ◽  
pp. 1582-1583 ◽  
Author(s):  
Jessica Schneider ◽  
Heiko Andrea ◽  
Jochen Blom ◽  
Sebastian Jaenicke ◽  
Christian Rückert ◽  
...  
Keyword(s):  
Genome Sequence ◽  
De Novo ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Sphingoid Bases ◽  
Biotechnological Production ◽  
Protein Coding ◽  
Coding Sequences ◽  
Content Type ◽  
Wickerhamomyces Ciferrii

ABSTRACTWickerhamomyces ciferriiis a microorganism characterized by the production and secretion of large amounts of acetylated sphingoid bases, in particular tetraacetyl phytosphingosine. Here, we present the 15.90-Mbp draft genome sequence ofW. ciferriiNRRL Y-1031 F-60-10 generated by pyrosequencing andde novoassembly. The draft genome sequence comprising 364 contigs in 150 scaffolds was annotated and covered 6,702 protein-coding sequences. This information will contribute to the metabolic engineering of this yeast to improve the yield and spectrum of acetylated sphingoid bases in biotechnological production.

scholarly journals Draft Genome Sequence of Urease-Producing Pseudorhodobacter sp. Strain E13, Isolated from the Yellow Sea in Gunsan, South Korea

2019 ◽  
Vol 8 (23) ◽  
Author(s):  
Si Chul Kim ◽  
Hyo Jung Lee
Keyword(s):  
South Korea ◽  
Genome Sequence ◽  
Yellow Sea ◽  
Draft Genome ◽  
The Yellow Sea ◽  
Draft Genome Sequence ◽  
Protein Coding ◽  
Coding Sequences ◽  
Gram Negative ◽  
Content Type

Here, we report the draft genome sequence of Pseudorhodobacter sp. strain E13, a Gram-negative, aerobic, nonflagellated, and rod-shaped bacterium which was isolated from the Yellow Sea in South Korea. The assembled genome sequence is 3,878,578 bp long with 3,646 protein-coding sequences in 159 contigs.

scholarly journals Draft Genome Sequence of Freshwater-Derived Streptomyces sp. Strain BPSDS2, Isolated from Damte Stream, Northeast India

2019 ◽  
Vol 8 (43) ◽  
Author(s):  
Zothanpuia ◽  
Ajit Kumar Passari ◽  
Purbajyoti Deka ◽  
Vinay Rajput ◽  
Lakshmi P. M. Priya ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Northeast India ◽  
Draft Genome Sequence ◽  
Freshwater Sediments ◽  
Protein Coding ◽  
Coding Sequences ◽  
Content Type ◽  
Streptomyces Sp

We report the draft genome sequence of Streptomyces sp. strain BPSDS2, isolated from freshwater sediments in Northeast India. The draft genome has a size of 8.27 Mb and 7,559 protein-coding sequences.

scholarly journals Draft Genome Sequence of the Lactococcus lactis 11/19-B1 Strain, Isolated from Kiwifruit

2020 ◽  
Vol 9 (36) ◽  
Author(s):  
Ken Ishioka ◽  
Kyoko Nishiyama ◽  
Tatsuo Suzutani
Keyword(s):  
Lactococcus Lactis ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Homology Search ◽  
Protein Coding ◽  
Coding Sequences ◽  
Content Type

ABSTRACT We report here the draft genome sequence of Lactococcus lactis strain 11/19-B1, isolated from kiwifruit. The 11/19-B1 strain possesses one chromosome and five plasmids and has a predicted 2,429 protein-coding sequences. DFAST annotation and a BLASTp homology search estimated that 11/19-B1 possesses three bacteriocin immunity proteins and four bacteriocin proteins.

scholarly journals Draft Genome Sequence of Rheinheimera sp. F8, a Biofilm-Forming Strain Which Produces Large Amounts of Extracellular DNA

2016 ◽  
Vol 4 (2) ◽  
Author(s):  
Anna-Kathrin Schuster ◽  
Ulrich Szewzyk
Keyword(s):  
Genome Sequence ◽  
De Novo ◽  
Draft Genome ◽  
Extracellular Dna ◽  
Draft Genome Sequence ◽  
Protein Coding ◽  
Coding Sequences

Rheinheimera sp. strain F8 is a biofilm-forming gammaproteobacterium that has been found to produce large amounts of filamentous extracellular DNA. Here, we announce the de novo assembly of its genome. It is estimated to be 4,464,511 bp in length, with 3,970 protein-coding sequences and 92 RNA-coding sequences.

scholarly journals Draft Genome Sequence of Pannonibacter indicus Strain HT23T (DSM 23407T), a Highly Arsenate-Tolerant Bacterium Isolated from a Hot Spring in India

2017 ◽  
Vol 5 (18) ◽  
Author(s):  
Saumya Bandyopadhyay ◽  
William B. Whitman ◽  
Subrata K. Das
Keyword(s):  
Genome Sequence ◽  
Hot Spring ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Protein Coding ◽  
Coding Sequences ◽  
Content Type ◽  
Arsenate Resistance

ABSTRACT Pannonibacter indicus strain HT23T, a highly arsenate-tolerant bacterium, was isolated from a tropical hot spring. The estimated genome is 4.2 Mb with 3,818 protein-coding sequences containing putative genes, some of which are involved in arsenate resistance.

scholarly journals High-Quality Draft Genome Sequence of Burkholderia contaminans CH-1, a Gram-Negative Bacterium That Metabolizes 2-Azahypoxanthine, a Plant Growth-Regulating Compound

2017 ◽  
Vol 5 (41) ◽  
Author(s):  
Jae-Hoon Choi ◽  
Hikaru Sugiura ◽  
Ryota Moriuchi ◽  
Hirokazu Kawagishi ◽  
Hideo Dohra
Keyword(s):  
Plant Growth ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Negative Bacterium ◽  
High Quality ◽  
Protein Coding ◽  
Coding Sequences ◽  
Content Type ◽  
Burkholderia Contaminans

ABSTRACT Burkholderia contaminans strain CH-1 converts 2-azahypoxnathine to 2-aza-8-oxohypoxanthine, plant growth-regulating compounds, by oxidation. We report here the high-quality draft genome sequence of B. contaminans CH-1. The genome contains 8,065 protein-coding sequences, including several genes possibly involved in metabolizing 2-azahypoxanthine.

scholarly journals Draft Genome Sequence of Vibrio splendidus DSM 19640

2017 ◽  
Vol 5 (48) ◽  
Author(s):  
Cynthia Maria Chibani ◽  
Anja Poehlein ◽  
Olivia Roth ◽  
Heiko Liesegang ◽  
Carolin Charlotte Wendling
Keyword(s):  
Genome Sequence ◽  
Type Strain ◽  
Draft Genome ◽  
Abundant Species ◽  
Draft Genome Sequence ◽  
Vibrio Splendidus ◽  
Protein Coding ◽  
Coding Sequences ◽  
Content Type

ABSTRACT Here, we present the draft genome sequence of Vibrio splendidus type strain DSM 19640. V. splendidus is an abundant species among coastal vibrioplankton. The assembly resulted in a 5,729,362-bp draft genome with 5,032 protein-coding sequences, 6 rRNAs, and 117 tRNAs.

scholarly journals Draft Genome Sequence of Duganella sp. Strain DN04, Isolated from Cultivated Soil

2019 ◽  
Vol 8 (32) ◽  
Author(s):  
Rachel Raths ◽  
Vincent Peta ◽  
Heike Bücking
Keyword(s):  
North Carolina ◽  
Genome Size ◽  
Genome Sequence ◽  
Novel Species ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Protein Coding ◽  
Coding Sequences ◽  
Content Type ◽  
Maize Field

Here, we sequenced Duganella sp. strain DN04, a novel species within the genus Duganella that was isolated from a maize field in North Carolina. The assembled draft genome size is 6,562,230 bp, with a total of 6,039 protein coding sequences and 3,889 functionally assigned genes, including genes putatively involved in the colonization of plants.

scholarly journals Draft Genome Sequence of Terrimicrobium sacchariphilum NM-5T, a Facultative Anaerobic Soil Bacterium of the Class Spartobacteria

2017 ◽  
Vol 5 (30) ◽  
Author(s):  
Yan-Ling Qiu ◽  
Dieter M. Tourlousse ◽  
Norihisa Matsuura ◽  
Akiko Ohashi ◽  
Yuji Sekiguchi
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Soil Bacterium ◽  
Draft Genome Sequence ◽  
High Quality ◽  
Protein Coding ◽  
Coding Sequences ◽  
Content Type ◽  
Facultative Anaerobic

ABSTRACT We report here a high-quality draft genome sequence of Terrimicrobium sacchariphilum strain NM-5T, a facultative anaerobic, mesophilic, fermentative bacterium belonging to the class Spartobacteria of the phylum Verrucomicrobia. The genome comprises 4,751,807 bp in three contigs and has a G+C content of 60.19%. Annotation predicted 4,175 protein-coding sequences and 54 RNAs.

scholarly journals Draft Genome Sequence of the Caffeine-Degrading Methylotroph Methylorubrum populi Pinkel

2019 ◽  
Vol 8 (47) ◽  
Author(s):  
Rebecca E. Parales ◽  
Gaurav Sharma ◽  
Xiangsheng Zhang ◽  
Gabriel A. Subuyuj ◽  
Jordan T. Langner ◽  
...  
Keyword(s):  
Energy Source ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
High Quality ◽  
Protein Coding ◽  
Coding Sequences ◽  
Content Type ◽  
Selective Enrichment ◽  
Caffeine Degradation

A pink-pigmented facultative methylotroph, Methylorubrum populi Pinkel, was isolated from compost by selective enrichment with caffeine (3,5,7-trimethylxanthine) as the sole carbon, nitrogen, and energy source. We report here its high-quality draft genome sequence, assembled in 35 contigs totaling 5,630,907 bp. We identified 5,681 protein-coding sequences, including those putatively involved in caffeine degradation.

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