scholarly journals Application of the [3H]Leucine Incorporation Technique for Quantification of Bacterial Secondary Production Associated with Decaying Wetland Plant Litter

2006 ◽  
Vol 72 (9) ◽  
pp. 5948-5956 ◽  
Author(s):  
Jane E. Gillies ◽  
Kevin A. Kuehn ◽  
Steven N. Francoeur ◽  
Robert K. Neely
Keyword(s):  
Plant Species ◽  
Bacterial Production ◽  
Original Description ◽  
Plant Litter ◽  
Leucine Incorporation ◽  
Saturation Curve ◽  
Wetland Plant ◽  
Wide Range ◽  
Bacterial Uptake ◽  
Substrate Saturation

ABSTRACT The radiolabeled leucine incorporation technique for quantifying rates of bacterial production has increased in popularity since its original description for bacterioplankton communities. Prior studies addressing incorporation conditions (e.g., substrate saturation) for bacterial communities in other habitats, such as decaying plant litter, have reported a wide range of final leucine concentrations (400 nM to 50 μM) required to achieve saturation-level uptake. We assessed the application of the [3H]leucine incorporation procedure for measuring bacterial production on decaying wetland plant litter. Substrate saturation experiments (nine concentrations, 10 nM to 50 μM final leucine concentration) were conducted on three dates for microbial communities colonizing the submerged litter of three emergent plant species (Typha angustifolia, Schoenoplectus validus, and Phragmites australis). A modified [3H]leucine protocol was developed by coupling previously described incubation and alkaline extraction protocols with microdialysis (500 molecular weight cutoff membrane) of the final radiolabeled protein extract. The incorporation of [3H]leucine into protein exhibited a biphasic saturation curve, with lower apparent Km values ranging from 400 nM to 4.2 μM depending on the plant species studied. Upper apparent Km values ranged from 1.3 to 59 μM. These results suggest differential uptake by litter-associated microbial assemblages, with the lower apparent Km values possibly representing bacterial uptake and higher apparent Km values representing a combination of both bacterial and nonbacterial (e.g., eukaryotic) uptake.

scholarly journals Use of the [14C]Leucine Incorporation Technique To Measure Bacterial Production in River Sediments and the Epiphyton

1999 ◽  
Vol 65 (10) ◽  
pp. 4411-4418 ◽  
Author(s):  
Helmut Fischer ◽  
Martin Pusch
Keyword(s):  
Bacterial Production ◽  
River Sediments ◽  
Extraction Procedure ◽  
Pelagic Zone ◽  
Leucine Incorporation ◽  
Bacterial Protein ◽  
Aquatic Habitats ◽  
Core Incubation ◽  
Wide Range ◽  
Substrate Saturation

ABSTRACT Bacterial production is a key parameter for the understanding of carbon cycling in aquatic ecosystems, yet it remains difficult to measure in many aquatic habitats. We therefore tested the applicability of the [14C]leucine incorporation technique for the measurement of bulk bacterial production in various habitats of a lowland river ecosystem. To evaluate the method, we determined (i) extraction efficiencies of bacterial protein from the sediments, (ii) substrate saturation of leucine in sediments, the biofilms on aquatic plants (epiphyton), and the pelagic zone, (iii) bacterial activities at different leucine concentrations, (iv) specificity of leucine uptake by bacteria, and (v) the effect of the incubation technique (perfused-core incubation versus slurry incubation) on leucine incorporation into protein. Bacterial protein was best extracted from sediments and precipitated by hot trichloroacetic acid treatment following ultrasonication. For epiphyton, an alkaline-extraction procedure was most efficient. Leucine incorporation saturation occurred at 1 μM in epiphyton and 100 nM in the pelagic zone. Saturation curves in sediments were difficult to model but showed the first level of leucine saturation at 50 μM. Increased uptake at higher leucine concentrations could be partly attributed to eukaryotes. Addition of micromolar concentrations of leucine did not enhance bacterial electron transport activity or DNA replication activity. Similar rates of leucine incorporation into protein calculated for whole sediment cores were observed after slurry and perfused-core incubations, but the rates exhibited strong vertical gradients after the core incubation. We conclude that the leucine incorporation method can measure bacterial production in a wide range of aquatic habitats, including fluvial sediments, if substrate saturation and isotope dilution are determined.

scholarly journals Heterotrophic bacterial production in the South East Pacific: longitudinal trends and coupling with primary production

2007 ◽  
Vol 4 (4) ◽  
pp. 2761-2791 ◽  
Author(s):  
F. Van Wambeke ◽  
I. Obernosterer ◽  
T. Moutin ◽  
S. Duhamel ◽  
O. Ulloa ◽  
...  
Keyword(s):  
Pacific Ocean ◽  
Primary Production ◽  
Bacterial Production ◽  
South Pacific ◽  
Leucine Incorporation ◽  
The South ◽  
Phytoplankton Primary Production ◽  
East Pacific ◽  
Wide Range ◽  
South Pacific Gyre

Abstract. Spatial variations of heterotrophic bacterial production and phytoplankton primary production were investigated across South East Pacific Ocean (–141° W, –8° S to –72° W, –35° S) in November–December 2004. Bacterial production (³H leucine incorporation) integrated over the euphotic zone encompassed a wide range of values, from 43 mg C m−2 d−1 in the hyper-oligotrophic South Pacific Gyre to 392 mg C m−2 d−1 in the upwelling off Chile. Within the gyre (120° W, 22° S) records of low phytoplankton biomass (7 mg TChla m−2) were obtained and in situ 14C based particulate primary production rates were as low as 153 mg C m−2 d−1, thus equal to the value considered as a limit for primary production under strong oligotrophic conditions. In the South Pacific gyre average rates of ³H leucine incorporation rates, and leucine incorporation rates per cell (5–21 pmol L−1 h−1 and 15–56×10−21 mol cell−1 h−1, respectively), were in the same range as those reported for other oligotrophic sub tropical and temperate waters. Rates of dark community respiration, determined at selected stations across the transect varied in a narrow range (42–97 mmol O2 m−2 d−1), except for one station in the upwelling off Chile (245 mmol O2 m−2 d−1). Bacterial growth efficiencies varied between 5 and 38% and bacterial carbon demand largely exceeded 14C particulate primary production across the South Pacific Ocean. Net community production also revealed negative values in the South Pacific Gyre (–13±20 to –37±40 mmol O2 m−2 d−1). Such imbalances being impossible in this area far from any external input, we discuss the techniques involved for determining the coupling between primary production and bacterial heterotrophic production.

scholarly journals Heterotrophic bacterial production in the eastern South Pacific: longitudinal trends and coupling with primary production

2008 ◽  
Vol 5 (1) ◽  
pp. 157-169 ◽  
Author(s):  
F. Van Wambeke ◽  
I. Obernosterer ◽  
T. Moutin ◽  
S. Duhamel ◽  
O. Ulloa ◽  
...  
Keyword(s):  
Pacific Ocean ◽  
Primary Production ◽  
Bacterial Production ◽  
South Pacific ◽  
Leucine Incorporation ◽  
The South ◽  
Phytoplankton Primary Production ◽  
South Pacific Ocean ◽  
Wide Range ◽  
South Pacific Gyre

Abstract. Spatial variation of heterotrophic bacterial production and phytoplankton primary production were investigated across the eastern South Pacific Ocean (−141° W, −8° S to −72° W, −35° S) in November–December 2004. Bacterial production (3H leucine incorporation) integrated over the euphotic zone encompassed a wide range of values, from 43 mg C m−2 d−1 in the hyper-oligotrophic South Pacific Gyre to 392 mg C m−2 d−1 in the upwelling off Chile. In the gyre (120° W, 22° S) records of low phytoplankton biomass (7 mg Total Chla m−2) were obtained and fluxes of in situ 14C-based particulate primary production were as low as 153 mg C m−2 d−1, thus equal to the value considered as a limit for primary production under strong oligotrophic conditions. Average rates of 3H leucine incorporation rates, and leucine incorporation rates per cell (5–21 pmol l−1 h−1 and 15–56×10−21 mol cell−1 h−1, respectively) determined in the South Pacific gyre, were in the same range as those reported for other oligotrophic subtropical and temperate waters. Fluxes of dark community respiration, determined at selected stations across the transect varied in a narrow range (42–97 mmol O2 m−2 d−1), except for one station in the upwelling off Chile (245 mmol O2 m−2 d−1). Bacterial growth efficiencies varied between 5 and 38%. Bacterial carbon demand largely exceeded 14C particulate primary production across the South Pacific Ocean, but was lower or equal to gross community production.

scholarly journals Advances and Applications of Water Phytoremediation: A Potential Biotechnological Approach for the Treatment of Heavy Metals from Contaminated Water

2021 ◽  
Vol 18 (10) ◽  
pp. 5215
Author(s):  
Cristián Raziel Delgado-González ◽  
Alfredo Madariaga-Navarrete ◽  
José Miguel Fernández-Cortés ◽  
Margarita Islas-Pelcastre ◽  
Goldie Oza ◽  
...  
Keyword(s):  
Water Quality ◽  
Plant Species ◽  
Treatment Strategies ◽  
Pollution Sources ◽  
Water Contaminants ◽  
Biotechnological Approach ◽  
Wide Range ◽  
Great Relevance ◽  
Multidisciplinary Perspective ◽  
Viable Method

Potable and good-quality drinking water availability is a serious global concern, since several pollution sources significantly contribute to low water quality. Amongst these pollution sources, several are releasing an array of hazardous agents into various environmental and water matrices. Unfortunately, there are not very many ecologically friendly systems available to treat the contaminated environment exclusively. Consequently, heavy metal water contamination leads to many diseases in humans, such as cardiopulmonary diseases and cytotoxicity, among others. To solve this problem, there are a plethora of emerging technologies that play an important role in defining treatment strategies. Phytoremediation, the usage of plants to remove contaminants, is a technology that has been widely used to remediate pollution in soils, with particular reference to toxic elements. Thus, hydroponic systems coupled with bioremediation for the removal of water contaminants have shown great relevance. In this review, we addressed several studies that support the development of phytoremediation systems in water. We cover the importance of applied science and environmental engineering to generate sustainable strategies to improve water quality. In this context, the phytoremediation capabilities of different plant species and possible obstacles that phytoremediation systems may encounter are discussed with suitable examples by comparing different mechanistic processes. According to the presented data, there are a wide range of plant species with water phytoremediation potential that need to be studied from a multidisciplinary perspective to make water phytoremediation a viable method.

scholarly journals Native Plant Capacity for Gentle Remediation in Heavily Polluted Mines

2021 ◽  
Vol 11 (4) ◽  
pp. 1769
Author(s):  
María Noelia Jiménez ◽  
Gianluigi Bacchetta ◽  
Francisco Bruno Navarro ◽  
Mauro Casti ◽  
Emilia Fernández-Ondoño
Keyword(s):  
Trace Elements ◽  
Plant Species ◽  
Contaminated Soils ◽  
Aerial Part ◽  
Bioaccumulation Factor ◽  
Native Plant ◽  
Dittrichia Viscosa ◽  
Wide Range ◽  
Cistus Salviifolius ◽  
Plant Capacity

The use of plant species to stabilize and accumulate trace elements in contaminated soils is considered of great usefulness given the difficulty of decontaminating large areas subjected to mining for long periods. In this work, the bioaccumulation of trace elements is studied by relating the concentrations in leaves and roots of three plants of Mediterranean distribution (Dittrichia viscosa, Cistus salviifolius, Euphorbia pithyusa subsp. cupanii) with the concentrations of trace elements in contaminated and uncontaminated soils. Furthermore, in the case of D. viscosa, to know the concentration of each element by biomass, the pool of trace elements was determined both in the aerial part and in the roots. The bioaccumulation factor was not high enough in any of the species studied to be considered as phytoextractors. However, species like the ones studied in this work that live on soils with a wide range of concentration of trace elements and that develop a considerable biomass could be considered for stabilization of contaminated soils. The plant species studied in this work are good candidates for gentle-remediation options in the polluted Mediterranean.

Periodic wavelet descriptor of plant leaf and its application in botany

2015 ◽  
Vol 13 (06) ◽  
pp. 1550043 ◽  
Author(s):  
Qing-Mao Zeng ◽  
Tong-Lin Zhu ◽  
Xue-Ying Zhuang ◽  
Ming-Xuan Zheng
Keyword(s):  
Species Identification ◽  
Plant Species ◽  
Shape Descriptor ◽  
Plant Leaf ◽  
Practical Applications ◽  
Wide Range ◽  
Periodic Wavelet ◽  
Plant Species Identification ◽  
Botanical Research ◽  
Wavelet Descriptor

Leaf is one of the most important organs of plant. Leaf contour or outline, usually a closed curve, is a fundamental morphological feature of leaf in botanical research. In this paper, a novel shape descriptor based on periodic wavelet series and leaf contour is presented, which we name as Periodic Wavelet Descriptor (PWD). The PWD of a leaf actually expresses the leaf contour in a vector form. Consequently, the PWD of a leaf has a wide range in practical applications, such as leaf modeling, plant species identification and classification, etc. In this work, the plant species identification and the leaf contour reconstruction, as two practical applications, are discussed to elaborate how to employ the PWD of a plant leaf in botanical research.

Responses of insect pests, pathogens, and invasive plant species to climate change in the forests of northeastern North America: What can we predict?This article is one of a selection of papers from NE Forests 2100: A Synthesis of Climate Change Impacts on Forests of the Northeastern US and Eastern Canada.

2009 ◽  
Vol 39 (2) ◽  
pp. 231-248 ◽  
Author(s):  
Jeffrey S. Dukes ◽  
Jennifer Pontius ◽  
David Orwig ◽  
Jeffrey R. Garnas ◽  
Vikki L. Rodgers ◽  
...  
Keyword(s):  
Climate Change ◽  
Plant Species ◽  
Invasive Plant ◽  
Insect Pests ◽  
Adelges Tsugae ◽  
Pest Species ◽  
Invasive Plant Species ◽  
Eastern Canada ◽  
Wide Range ◽  
Nuisance Species

Climate models project that by 2100, the northeastern US and eastern Canada will warm by approximately 3–5 °C, with increased winter precipitation. These changes will affect trees directly and also indirectly through effects on “nuisance” species, such as insect pests, pathogens, and invasive plants. We review how basic ecological principles can be used to predict nuisance species’ responses to climate change and how this is likely to impact northeastern forests. We then examine in detail the potential responses of two pest species (hemlock woolly adelgid ( Adelges tsugae Annand) and forest tent caterpillar ( Malacosoma disstria Hubner)), two pathogens (armillaria root rot ( Armillaria spp.) and beech bark disease ( Cryptococcus fagisuga Lind. + Neonectria spp.)), and two invasive plant species (glossy buckthorn ( Frangula alnus Mill.) and oriental bittersweet ( Celastrus orbiculatus Thunb.)). Several of these species are likely to have stronger or more widespread effects on forest composition and structure under the projected climate. However, uncertainty pervades our predictions because we lack adequate data on the species and because some species depend on complex, incompletely understood, unstable relationships. While targeted research will increase our confidence in making predictions, some uncertainty will always persist. Therefore, we encourage policies that allow for this uncertainty by considering a wide range of possible scenarios.

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