scholarly journals Development of Anti-Infectives Using Phage Display: Biological Agents against Bacteria, Viruses, and Parasites

2012 ◽  
Vol 56 (9) ◽  
pp. 4569-4582 ◽  
Author(s):  
Johnny X. Huang ◽  
Sharon L. Bishop-Hurley ◽  
Matthew A. Cooper

ABSTRACTThe vast majority of anti-infective therapeutics on the market or in development are small molecules; however, there is now a nascent pipeline of biological agents in development. Until recently, phage display technologies were used mainly to produce monoclonal antibodies (MAbs) targeted against cancer or inflammatory disease targets. Patent disputes impeded broad use of these methods and contributed to the dearth of candidates in the clinic during the 1990s. Today, however, phage display is recognized as a powerful tool for selecting novel peptides and antibodies that can bind to a wide range of antigens, ranging from whole cells to proteins and lipid targets. In this review, we highlight research that exploits phage display technology as a means of discovering novel therapeutics against infectious diseases, with a focus on antimicrobial peptides and antibodies in clinical or preclinical development. We discuss the different strategies and methods used to derive, select, and develop anti-infectives from phage display libraries and then highlight case studies of drug candidates in the process of development and commercialization. Advances in screening, manufacturing, and humanization technologies now mean that phage display can make a significant contribution in the fight against clinically important pathogens.

2017 ◽  
Vol 38 (6) ◽  
pp. 3915
Author(s):  
Greice Japolla ◽  
Ana Flávia Batista Penido ◽  
Greyciele Rodrigues Almeida ◽  
Luiz Artur Mendes Bataus ◽  
Jair Pereira Cunha Junior ◽  
...  

The specificity of monoclonal antibodies (mAbs) to desired targets makes these molecules suitable for therapeutic and diagnostic uses against a wide range of pathogens. Phage display antibody libraries offer one method by which mAbs can be selected for, without the use of conventional hybridoma technology. In this work, phage display technology was used to construct, select and characterize a combinatorial single chain fragment variable (scFv) antibody library against bovine herpesvirus type 1 (BoHV-1) from the immune repertoire of chickens immunized with the virus. In silico analysis of the hypervariable domains of the antibody heavy chains revealed a high frequency of scFv fragments with low variability, suggesting that selection had probably been carried out and favored by a few im-munogenic viral antigens. The reactivity of the scFv fragments selected against BoHV-1 was demon-strated by Phage-ELISA. A significant increase in antibody reactivity to the target was observed after six rounds of library selection, showing its potential use as a molecule for BoHV-1 diagnosis. The strategy described here opens up a field for the use of phage display as a tool for selection of mono-clonal antibodies that could be used for theranostic applications against infectious and parasitic dis-eases of veterinary interest.


Antibodies ◽  
2019 ◽  
Vol 8 (3) ◽  
pp. 44 ◽  
Author(s):  
Juan C. Almagro ◽  
Martha Pedraza-Escalona ◽  
Hugo Iván Arrieta ◽  
Sonia Mayra Pérez-Tapia

Phage display technology has played a key role in the remarkable progress of discovering and optimizing antibodies for diverse applications, particularly antibody-based drugs. This technology was initially developed by George Smith in the mid-1980s and applied by John McCafferty and Gregory Winter to antibody engineering at the beginning of 1990s. Here, we compare nine phage display antibody libraries published in the last decade, which represent the state of the art in the discovery and development of therapeutic antibodies using phage display. We first discuss the quality of the libraries and the diverse types of antibody repertoires used as substrates to build the libraries, i.e., naïve, synthetic, and semisynthetic. Second, we review the performance of the libraries in terms of the number of positive clones per panning, hit rate, affinity, and developability of the selected antibodies. Finally, we highlight current opportunities and challenges pertaining to phage display platforms and related display technologies.


2012 ◽  
Vol 59 (3) ◽  
Author(s):  
Anna Cyranka-Czaja ◽  
Jacek Otlewski

Specific, high affinity binding macromolecules are of great importance for biomedical and biotechnological applications. The most popular classical antibody-based molecules have recently been challenged by alternative scaffolds with desirable biophysical properties. Phage display technology applied to such scaffolds allows generation of potent affinity reagents by in vitro selection. Here, we report identification and characterization of a novel helical polypeptide with advantageous biophysical properties as a template for construction of phage display libraries. A three-helix bundle structure, based on Measles virus phosphoprotein P shows a very favourable stability and solubility profile. We designed, constructed and characterized six different types of phage display libraries based on the proposed template. Their functional size of over 10(9) independent clones, balanced codon bias and decent display level are key parameters attesting to the quality and utility of the libraries. The new libraries are a promising tool for isolation of high affinity binders based on a small helical scaffold which could become a convenient alternative to antibodies.


2017 ◽  
Vol 1 (1) ◽  
pp. 95-96
Author(s):  
Dmitri Olegovich Dormeshkin

Abstract Here we provide our pipeline for antibody discovery process. Starting from de novo isolation from custom made phage display libraries to expression and downstream applications; it allows us to obtain recombinant antibodies with desired properties to vast set of antigens. We also developed the CYB5-fusion system for periplasmic expression of multimeric proteins with the possibility of process monitoring. The combination of redox dependent absorbance spectrum of red-colored cytochrome b5 with its high value molar extinction coefficient allows us to monitor antibody fusion proteins localization, redox state and quantify them in reliable way in turbid solutions. Moreover, it was revealed that due to outstanding stability and solubility, cytochrome b5 significantly enhances expression level of antibody fragments in Escherichia coli periplasm.


Blood ◽  
2013 ◽  
Vol 122 (21) ◽  
pp. 4442-4442
Author(s):  
Katja Klausz ◽  
Renate Burger ◽  
Christian Kellner ◽  
Pia Glorius ◽  
Andreas Guenther ◽  
...  

Introduction Multiple Myeloma (MM) is a malignant plasma cell disorder with high incidence and mortality. Monoclonal antibodies represent promising new treatment options and are widely applied in cancer therapy, but none have yet been approved for the treatment of MM. Daratumumab and other antibodies have recently shown encouraging results in clinical trials, but there is still a need to identify plasma cell specific target structures suitable for this approach. Methods To identify novel plasma cell surface antigens or epitopes, synthetic human single-chain fragment variable (scFv) phage display libraries were screened by using a newly established subtractive, cellular screening approach. Pre-absorption steps with granulocytes and T lymphocytes were applied with subsequent positive selection for phages that show binding to plasma cell lines INA-6 and JK-6L. The binding patterns of the resulting phage antibodies on various cell types were evaluated by cellular ELISA and flow cytometry. Based on its favorable binding profile, MSH-TP15 was selected and the coding sequence was used to generate a fully human scFv-Fc fusion protein (mini-antibody) for functional assays. Results Screening of phage display libraries by using our novel strategy resulted in a number of phage clones with preferential binding to MM cells. MSH-TP15 was selected based upon its strong binding to five MM cell lines (INA-6, JK-6L, L363, RPMI-8226, U266), while not recognizing a B cell precursor leukemia cell line (SEM), an immature acute myeloid leukemia cell line (KG-1a), and T cell derived acute lymphoblastic leukemia cell lines (CEM, Jurkat). In addition to MM cells, two Burkitt lymphoma cell lines (Daudi, Ramos) were also positive. Importantly, patient-derived CD138-positive malignant plasma cells were recognized while no reactivity was seen on other mononuclear cells of the same patient. No significant binding was seen on peripheral blood T lymphocytes, NK cells, monocytes, and granulocytes from healthy donors. Additional screening on a panel of stably transfected cell lines that express antigens already considered for antibody-based MM therapy (CD38, CD40, CD56, CD70, CD138, CS1, FGFR3, IGF-1R, IL-6R) revealed no reactivity. To subsequently evaluate direct (e.g. growth inhibition) and indirect (e.g. antibody-dependent cell-mediated cytotoxicity; ADCC) antibody effector functions, the coding sequence was used to generate a scFv-Fc fusion protein. This mini-antibody successfully retained its prior established binding properties. The antibody by itself was not capable to induce significant growth inhibition of INA-6, L363, and RPMI-8226 plasma cell lines. In contrast, MSH-TP15 was able to trigger ADCC, an important killing mechanism of therapeutic antibodies, against these myeloma cells with peripheral blood mononuclear cells as effector cells. Conclusions Phage display technology together with a cell-based screening approach led to the generation of an antibody that preferentially binds to MM cells, and is effective in antibody-mediated killing mechanisms. The recognized antigen is distinct from any of the MM antigens currently explored as targets for antibody therapy, and therefore represents a promising target structure suitable for an antibody-based therapeutic approach in myeloma. Disclosures: No relevant conflicts of interest to declare.


2020 ◽  
Vol 26 (42) ◽  
pp. 7672-7693 ◽  
Author(s):  
Bifang He ◽  
Anthony Mackitz Dzisoo ◽  
Ratmir Derda ◽  
Jian Huang

Background: Phage display is a powerful and versatile technology for the identification of peptide ligands binding to multiple targets, which has been successfully employed in various fields, such as diagnostics and therapeutics, drug-delivery and material science. The integration of next generation sequencing technology with phage display makes this methodology more productive. With the widespread use of this technique and the fast accumulation of phage display data, databases for these data and computational methods have become an indispensable part in this community. This review aims to summarize and discuss recent progress in the development and application of computational methods in the field of phage display. Methods: We undertook a comprehensive search of bioinformatics resources and computational methods for phage display data via Google Scholar and PubMed. The methods and tools were further divided into different categories according to their uses. Results: We described seven special or relevant databases for phage display data, which provided an evidence-based source for phage display researchers to clean their biopanning results. These databases can identify and report possible target-unrelated peptides (TUPs), thereby excluding false-positive data from peptides obtained from phage display screening experiments. More than 20 computational methods for analyzing biopanning data were also reviewed. These methods were classified into computational methods for reporting TUPs, for predicting epitopes and for analyzing next generation phage display data. Conclusion: The current bioinformatics archives, methods and tools reviewed here have benefitted the biopanning community. To develop better or new computational tools, some promising directions are also discussed.


2001 ◽  
Vol 4 (7) ◽  
pp. 553-572 ◽  
Author(s):  
D. Rodi ◽  
G. Agoston ◽  
R. Manon ◽  
R. Lapcevich ◽  
S. Green ◽  
...  

Viruses ◽  
2021 ◽  
Vol 13 (4) ◽  
pp. 568
Author(s):  
Godwin W. Nchinda ◽  
Nadia Al-Atoom ◽  
Mamie T. Coats ◽  
Jacqueline M. Cameron ◽  
Alain Bopda Waffo

Phage display technology involves the surface genetic engineering of phages to expose desirable proteins or peptides whose gene sequences are packaged within phage genomes, thereby rendering direct linkage between genotype with phenotype feasible. This has resulted in phage display systems becoming invaluable components of directed evolutionary biotechnology. The M13 is a DNA phage display system which dominates this technology and usually involves selected proteins or peptides being displayed through surface engineering of its minor coat proteins. The displayed protein or peptide’s functionality is often highly reduced due to harsh treatment of M13 variants. Recently, we developed a novel phage display system using the coliphage Qβ as a nano-biotechnology platform. The coliphage Qβ is an RNA phage belonging to the family of Leviviridae, a long investigated virus. Qβ phages exist as a quasispecies and possess features making them comparatively more suitable and unique for directed evolutionary biotechnology. As a quasispecies, Qβ benefits from the promiscuity of its RNA dependent RNA polymerase replicase, which lacks proofreading activity, and thereby permits rapid variant generation, mutation, and adaptation. The minor coat protein of Qβ is the readthrough protein, A1. It shares the same initiation codon with the major coat protein and is produced each time the ribosome translates the UGA stop codon of the major coat protein with the of misincorporation of tryptophan. This misincorporation occurs at a low level (1/15). Per convention and definition, A1 is the target for display technology, as this minor coat protein does not play a role in initiating the life cycle of Qβ phage like the pIII of M13. The maturation protein A2 of Qβ initiates the life cycle by binding to the pilus of the F+ host bacteria. The extension of the A1 protein with a foreign peptide probe recognizes and binds to the target freely, while the A2 initiates the infection. This avoids any disturbance of the complex and the necessity for acidic elution and neutralization prior to infection. The combined use of both the A1 and A2 proteins of Qβ in this display system allows for novel bio-panning, in vitro maturation, and evolution. Additionally, methods for large library size construction have been improved with our directed evolutionary phage display system. This novel phage display technology allows 12 copies of a specific desired peptide to be displayed on the exterior surface of Qβ in uniform distribution at the corners of the phage icosahedron. Through the recently optimized subtractive bio-panning strategy, fusion probes containing up to 80 amino acids altogether with linkers, can be displayed for target selection. Thus, combined uniqueness of its genome, structure, and proteins make the Qβ phage a desirable suitable innovation applicable in affinity maturation and directed evolutionary biotechnology. The evolutionary adaptability of the Qβ phage display strategy is still in its infancy. However, it has the potential to evolve functional domains of the desirable proteins, glycoproteins, and lipoproteins, rendering them superior to their natural counterparts.


PLoS ONE ◽  
2013 ◽  
Vol 8 (1) ◽  
pp. e53264 ◽  
Author(s):  
Jinhua Dong ◽  
Takahiro Otsuki ◽  
Tatsuya Kato ◽  
Tetsuya Kohsaka ◽  
Kazunori Ike ◽  
...  

2014 ◽  
Vol 33 (1) ◽  
pp. 28-33 ◽  
Author(s):  
Sara Mohammadzadeh ◽  
Masoumeh Rajabibazl ◽  
Mehdi Fourozandeh ◽  
Mohammad Javad Rasaee ◽  
Fatemeh Rahbarizadeh ◽  
...  

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