A seasonally invariant deep transform for visual terrain-relative navigation

2021 ◽  
Vol 6 (55) ◽  
pp. eabf3320
Author(s):  
Anthony T. Fragoso ◽  
Connor T. Lee ◽  
Austin S. McCoy ◽  
Soon-Jo Chung
Keyword(s):  
Deep Learning ◽  
Visual Navigation ◽  
Superior Performance ◽  
Seasonal Effects ◽  
Source Image ◽  
Relative Navigation ◽  
High Resolution Imagery ◽  
Uncertainty Estimates ◽  
Robotic Vehicle ◽  
Stable Invariant

Visual terrain-relative navigation (VTRN) is a localization method based on registering a source image taken from a robotic vehicle against a georeferenced target image. With high-resolution imagery databases of Earth and other planets now available, VTRN offers accurate, drift-free navigation for air and space robots even in the absence of external positioning signals. Despite its potential for high accuracy, however, VTRN remains extremely fragile to common and predictable seasonal effects, such as lighting, vegetation changes, and snow cover. Engineered registration algorithms are mature and have provable geometric advantages but cannot accommodate the content changes caused by seasonal effects and have poor matching skill. Approaches based on deep learning can accommodate image content changes but produce opaque position estimates that either lack an interpretable uncertainty or require tedious human annotation. In this work, we address these issues with targeted use of deep learning within an image transform architecture, which converts seasonal imagery to a stable, invariant domain that can be used by conventional algorithms without modification. Our transform preserves the geometric structure and uncertainty estimates of legacy approaches and demonstrates superior performance under extreme seasonal changes while also being easy to train and highly generalizable. We show that classical registration methods perform exceptionally well for robotic visual navigation when stabilized with the proposed architecture and are able to consistently anticipate reliable imagery. Gross mismatches were nearly eliminated in challenging and realistic visual navigation tasks that also included topographic and perspective effects.

A Survey of Network Embedding for Drug Analysis and Prediction

2020 ◽  
Vol 21 ◽  
Author(s):  
Zhixian Liu ◽  
Qingfeng Chen ◽  
Wei Lan ◽  
Jiahai Liang ◽  
Yiping Pheobe Chen ◽  
...  
Keyword(s):  
Deep Learning ◽  
Protein Function ◽  
Dimensional Space ◽  
Auxiliary Information ◽  
Matrix Decomposition ◽  
Drug Analysis ◽  
Machine Learning Algorithms ◽  
Superior Performance ◽  
Network Embedding ◽  
Similarity Estimation

: Traditional network-based computational methods have shown good results in drug analysis and prediction. However, these methods are time consuming and lack universality, and it is difficult to exploit the auxiliary information of nodes and edges. Network embedding provides a promising way for alleviating the above problems by transforming network into a low-dimensional space while preserving network structure and auxiliary information. This thus facilitates the application of machine learning algorithms for subsequent processing. Network embedding has been introduced into drug analysis and prediction in the last few years, and has shown superior performance over traditional methods. However, there is no systematic review of this issue. This article offers a comprehensive survey of the primary network embedding methods and their applications in drug analysis and prediction. The network embedding technologies applied in homogeneous network and heterogeneous network are investigated and compared, including matrix decomposition, random walk, and deep learning. Especially, the Graph neural network (GNN) methods in deep learning are highlighted. Further, the applications of network embedding in drug similarity estimation, drug-target interaction prediction, adverse drug reactions prediction, protein function and therapeutic peptides prediction are discussed. Several future potential research directions are also discussed.

scholarly journals Deep convolutional neural networks for cardiovascular vulnerable plaque detection

2019 ◽  
Vol 277 ◽  
pp. 02024 ◽  
Author(s):  
Lincan Li ◽  
Tong Jia ◽  
Tianqi Meng ◽  
Yizhe Liu
Keyword(s):  
Neural Networks ◽  
Deep Learning ◽  
Convolutional Neural Networks ◽  
Vulnerable Plaque ◽  
Recall Rate ◽  
Superior Performance ◽  
Learning Approaches ◽  
Deep Convolutional Neural Networks ◽  
Vulnerable Plaques ◽  
Plaque Detection

In this paper, an accurate two-stage deep learning method is proposed to detect vulnerable plaques in ultrasonic images of cardiovascular. Firstly, a Fully Convonutional Neural Network (FCN) named U-Net is used to segment the original Intravascular Optical Coherence Tomography (IVOCT) cardiovascular images. We experiment on different threshold values to find the best threshold for removing noise and background in the original images. Secondly, a modified Faster RCNN is adopted to do precise detection. The modified Faster R-CNN utilize six-scale anchors (122,162,322,642,1282,2562) instead of the conventional one scale or three scale approaches. First, we present three problems in cardiovascular vulnerable plaque diagnosis, then we demonstrate how our method solve these problems. The proposed method in this paper apply deep convolutional neural networks to the whole diagnostic procedure. Test results show the Recall rate, Precision rate, IoU (Intersection-over-Union) rate and Total score are 0.94, 0.885, 0.913 and 0.913 respectively, higher than the 1st team of CCCV2017 Cardiovascular OCT Vulnerable Plaque Detection Challenge. AP of the designed Faster RCNN is 83.4%, higher than conventional approaches which use one-scale or three-scale anchors. These results demonstrate the superior performance of our proposed method and the power of deep learning approaches in diagnose cardiovascular vulnerable plaques.

scholarly journals Deep Malaria Parasite Detection in Thin Blood Smear Microscopic Images

2021 ◽  
Vol 11 (5) ◽  
pp. 2284
Author(s):  
Asma Maqsood ◽  
Muhammad Shahid Farid ◽  
Muhammad Hassan Khan ◽  
Marcin Grzegorzek
Keyword(s):  
Neural Networks ◽  
Deep Learning ◽  
Red Blood Cells ◽  
Convolutional Neural Networks ◽  
Blood Cells ◽  
Superior Performance ◽  
Learning Models ◽  
Infected Female ◽  
The World ◽  
Augmentation Techniques

Malaria is a disease activated by a type of microscopic parasite transmitted from infected female mosquito bites to humans. Malaria is a fatal disease that is endemic in many regions of the world. Quick diagnosis of this disease will be very valuable for patients, as traditional methods require tedious work for its detection. Recently, some automated methods have been proposed that exploit hand-crafted feature extraction techniques however, their accuracies are not reliable. Deep learning approaches modernize the world with their superior performance. Convolutional Neural Networks (CNN) are vastly scalable for image classification tasks that extract features through hidden layers of the model without any handcrafting. The detection of malaria-infected red blood cells from segmented microscopic blood images using convolutional neural networks can assist in quick diagnosis, and this will be useful for regions with fewer healthcare experts. The contributions of this paper are two-fold. First, we evaluate the performance of different existing deep learning models for efficient malaria detection. Second, we propose a customized CNN model that outperforms all observed deep learning models. It exploits the bilateral filtering and image augmentation techniques for highlighting features of red blood cells before training the model. Due to image augmentation techniques, the customized CNN model is generalized and avoids over-fitting. All experimental evaluations are performed on the benchmark NIH Malaria Dataset, and the results reveal that the proposed algorithm is 96.82% accurate in detecting malaria from the microscopic blood smears.

scholarly journals Uncertainty-Aware Deep Learning-Based Cardiac Arrhythmias Classification Model of Electrocardiogram Signals

Computers ◽  
2021 ◽  
Vol 10 (6) ◽  
pp. 82
Author(s):  
Ahmad O. Aseeri
Keyword(s):  
Deep Learning ◽  
Cardiac Arrhythmias ◽  
Large Scale ◽  
Clinical Decision Making ◽  
Probabilistic Approach ◽  
Classification Model ◽  
Gating Mechanism ◽  
Uncertainty Estimates ◽  
Wide Range

Deep Learning-based methods have emerged to be one of the most effective and practical solutions in a wide range of medical problems, including the diagnosis of cardiac arrhythmias. A critical step to a precocious diagnosis in many heart dysfunctions diseases starts with the accurate detection and classification of cardiac arrhythmias, which can be achieved via electrocardiograms (ECGs). Motivated by the desire to enhance conventional clinical methods in diagnosing cardiac arrhythmias, we introduce an uncertainty-aware deep learning-based predictive model design for accurate large-scale classification of cardiac arrhythmias successfully trained and evaluated using three benchmark medical datasets. In addition, considering that the quantification of uncertainty estimates is vital for clinical decision-making, our method incorporates a probabilistic approach to capture the model’s uncertainty using a Bayesian-based approximation method without introducing additional parameters or significant changes to the network’s architecture. Although many arrhythmias classification solutions with various ECG feature engineering techniques have been reported in the literature, the introduced AI-based probabilistic-enabled method in this paper outperforms the results of existing methods in outstanding multiclass classification results that manifest F1 scores of 98.62% and 96.73% with (MIT-BIH) dataset of 20 annotations, and 99.23% and 96.94% with (INCART) dataset of eight annotations, and 97.25% and 96.73% with (BIDMC) dataset of six annotations, for the deep ensemble and probabilistic mode, respectively. We demonstrate our method’s high-performing and statistical reliability results in numerical experiments on the language modeling using the gating mechanism of Recurrent Neural Networks.

scholarly journals HMD-ARG: hierarchical multi-task deep learning for annotating antibiotic resistance genes

Microbiome ◽  
2021 ◽  
Vol 9 (1) ◽  
Author(s):  
Yu Li ◽  
Zeling Xu ◽  
Wenkai Han ◽  
Huiluo Cao ◽  
Ramzan Umarov ◽  
...  
Keyword(s):  
Antibiotic Resistance ◽  
Deep Learning ◽  
Resistance Genes ◽  
Antibiotic Resistance Genes ◽  
Third Party ◽  
Superior Performance ◽  
Beta Lactamase ◽  
Learning Framework ◽  
Sequence Encoding ◽  
Global Threat

Abstract Background The spread of antibiotic resistance has become one of the most urgent threats to global health, which is estimated to cause 700,000 deaths each year globally. Its surrogates, antibiotic resistance genes (ARGs), are highly transmittable between food, water, animal, and human to mitigate the efficacy of antibiotics. Accurately identifying ARGs is thus an indispensable step to understanding the ecology, and transmission of ARGs between environmental and human-associated reservoirs. Unfortunately, the previous computational methods for identifying ARGs are mostly based on sequence alignment, which cannot identify novel ARGs, and their applications are limited by currently incomplete knowledge about ARGs. Results Here, we propose an end-to-end Hierarchical Multi-task Deep learning framework for ARG annotation (HMD-ARG). Taking raw sequence encoding as input, HMD-ARG can identify, without querying against existing sequence databases, multiple ARG properties simultaneously, including if the input protein sequence is an ARG, and if so, what antibiotic family it is resistant to, what resistant mechanism the ARG takes, and if the ARG is an intrinsic one or acquired one. In addition, if the predicted antibiotic family is beta-lactamase, HMD-ARG further predicts the subclass of beta-lactamase that the ARG is resistant to. Comprehensive experiments, including cross-fold validation, third-party dataset validation in human gut microbiota, wet-experimental functional validation, and structural investigation of predicted conserved sites, demonstrate not only the superior performance of our method over the state-of-art methods, but also the effectiveness and robustness of the proposed method. Conclusions We propose a hierarchical multi-task method, HMD-ARG, which is based on deep learning and can provide detailed annotations of ARGs from three important aspects: resistant antibiotic class, resistant mechanism, and gene mobility. We believe that HMD-ARG can serve as a powerful tool to identify antibiotic resistance genes and, therefore mitigate their global threat. Our method and the constructed database are available at http://www.cbrc.kaust.edu.sa/HMDARG/.

scholarly journals Deep learning framework for handling concept drift and class imbalanced complex decision-making on streaming data

2021 ◽  
Author(s):  
S. Priya ◽  
R. Annie Uthra
Keyword(s):  
Decision Making ◽  
Deep Learning ◽  
Concept Drift ◽  
Class Imbalance ◽  
Streaming Data ◽  
Superior Performance ◽  
Data Streaming ◽  
Minority Class ◽  
Concept Drift Detection

AbstractIn present times, data science become popular to support and improve decision-making process. Due to the accessibility of a wide application perspective of data streaming, class imbalance and concept drifting become crucial learning problems. The advent of deep learning (DL) models finds useful for the classification of concept drift in data streaming applications. This paper presents an effective class imbalance with concept drift detection (CIDD) using Adadelta optimizer-based deep neural networks (ADODNN), named CIDD-ADODNN model for the classification of highly imbalanced streaming data. The presented model involves four processes namely preprocessing, class imbalance handling, concept drift detection, and classification. The proposed model uses adaptive synthetic (ADASYN) technique for handling class imbalance data, which utilizes a weighted distribution for diverse minority class examples based on the level of difficulty in learning. Next, a drift detection technique called adaptive sliding window (ADWIN) is employed to detect the existence of the concept drift. Besides, ADODNN model is utilized for the classification processes. For increasing the classifier performance of the DNN model, ADO-based hyperparameter tuning process takes place to determine the optimal parameters of the DNN model. The performance of the presented model is evaluated using three streaming datasets namely intrusion detection (NSL KDDCup) dataset, Spam dataset, and Chess dataset. A detailed comparative results analysis takes place and the simulation results verified the superior performance of the presented model by obtaining a maximum accuracy of 0.9592, 0.9320, and 0.7646 on the applied KDDCup, Spam, and Chess dataset, respectively.

Epileptic Seizure Prediction Using Deep Transformer Model

2021 ◽  
Author(s):  
Abhijeet Bhattacharya ◽  
Tanmay Baweja ◽  
S. P. K. Karri
Keyword(s):  
Signal Processing ◽  
Deep Learning ◽  
False Positive Rate ◽  
Superior Performance ◽  
Seizure Prediction ◽  
Advantages And Disadvantages ◽  
Positive Rate ◽  
Benchmark Datasets ◽  
Automated Screening ◽  
Transformer Model

The electroencephalogram (EEG) is the most promising and efficient technique to study epilepsy and record all the electrical activity going in our brain. Automated screening of epilepsy through data-driven algorithms reduces the manual workload of doctors to diagnose epilepsy. New algorithms are biased either towards signal processing or deep learning, which holds subjective advantages and disadvantages. The proposed pipeline is an end-to-end automated seizure prediction framework with a Fourier transform feature extraction and deep learning-based transformer model, a blend of signal processing and deep learning — this imbibes the potential features to automatically identify the attentive regions in EEG signals for effective screening. The proposed pipeline has demonstrated superior performance on the benchmark dataset with average sensitivity and false-positive rate per hour (FPR/h) as 98.46%, 94.83% and 0.12439, 0, respectively. The proposed work shows great results on the benchmark datasets and a big potential for clinics as a support system with medical experts monitoring the patients.

scholarly journals Building Extraction in Very High Resolution Imagery by Dense-Attention Networks

2018 ◽  
Vol 10 (11) ◽  
pp. 1768 ◽  
Author(s):  
Hui Yang ◽  
Penghai Wu ◽  
Xuedong Yao ◽  
Yanlan Wu ◽  
Biao Wang ◽  
...  
Keyword(s):  
Deep Learning ◽  
High Resolution ◽  
Building Extraction ◽  
Learning Networks ◽  
Feature Maps ◽  
Low Level ◽  
High Resolution Imagery ◽  
Very High Resolution Imagery ◽  
High Level ◽  
Very High

Building extraction from very high resolution (VHR) imagery plays an important role in urban planning, disaster management, navigation, updating geographic databases, and several other geospatial applications. Compared with the traditional building extraction approaches, deep learning networks have recently shown outstanding performance in this task by using both high-level and low-level feature maps. However, it is difficult to utilize different level features rationally with the present deep learning networks. To tackle this problem, a novel network based on DenseNets and the attention mechanism was proposed, called the dense-attention network (DAN). The DAN contains an encoder part and a decoder part which are separately composed of lightweight DenseNets and a spatial attention fusion module. The proposed encoder–decoder architecture can strengthen feature propagation and effectively bring higher-level feature information to suppress the low-level feature and noises. Experimental results based on public international society for photogrammetry and remote sensing (ISPRS) datasets with only red–green–blue (RGB) images demonstrated that the proposed DAN achieved a higher score (96.16% overall accuracy (OA), 92.56% F1 score, 90.56% mean intersection over union (MIOU), less training and response time and higher-quality value) when compared with other deep learning methods.

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