Yeast: an experimental organism for modern biology

Science ◽  
1988 ◽  
Vol 240 (4858) ◽  
pp. 1439-1443 ◽  
Author(s):  
D Botstein ◽  
G. Fink
2019 ◽  
Vol 46 (1) ◽  
pp. 63-74
Author(s):  
Stefano Mattioli

The rediscovery of the original, unedited Latin manuscript of Georg Wilhelm Steller's “De bestiis marinis” (“On marine mammals”), first published in 1751, calls for a new translation into English. The main part of the treatise contains detailed descriptions of four marine mammals, but the introduction is devoted to more general issues, including innovative speculation on morphology, ecology and biogeography, anticipating arguments and concepts of modern biology. Steller noted early that climate and food have a direct influence on body size, pelage and functional traits of mammals, potentially affecting reversible changes (phenotypic plasticity). Feeding and other behavioural habits have an impact on the geographical distribution of mammals. Species with a broad diet tend to have a wide distribution, whereas animals with a narrow diet more likely have only a restricted range. According to Steller, both sea and land then still concealed countless animals unknown to science.


Author(s):  
William Viney

Stephen Jay Gould, the biologist and author, once joked that were he an identical twin raised separately from his brother they could ‘hire ourselves out to a host of social scientists and practically name our fee’. In order to monetise Gould’s fantasy, one would want a form of twinship that could operate according to evidential, experimental, somatic and circumstantial ideals. And Gould admits that he and his brother would need to be viewed as ‘the only really adequate natural experiment for separating genetic from environmental effects in humans’. This chapter seeks to interrogate the evidential and experimental circumstances that may underpin the comic quips that guide modern biology. In human genetics, twins are used as experimental bodies that are made to matter in particular ways and for particular people; they become newly ‘animate’ for being enrolled into scientific research. Raised in cultures assumed to be alike or dissimilar, isolated by researchers for being valuable in the measured disentanglement of assembled molecular agents (which are sometimes distinguished from an assemblage referred to as an ‘environment’), twins achieve a status of experimental significance not just for what they do but also for what they are taken to be.


2019 ◽  
Vol 26 (6) ◽  
pp. 319-324
Author(s):  
Victor K. Uteshev ◽  
Edith N. Gakhova ◽  
Ludmila I. Kramarova ◽  
Natalia V. Shishova ◽  
Svetlana A. Kaurova ◽  
...  

In modern biology, a search for efficient and safe ways of long-term storage of animal genomes is vital for the survival of rare and endangered species. To date, the only reliable method of prolonging the preservation of genome is deep freezing of somatic and reproductive cells, including spermatozoa. Here we overview the current state of reproductive technologies and present the cryopresevation strategies of genetic material of selected amphibian species. These strategies were developed at the Institute of Cell Biophysics, Russian Academy of Sciences, Pushchino, Russia. Cryopreservation could help managing the threatened populations of amphibian species through genome storage and mediate the production of healthy animals from the stored material.


The review article discusses the possibilities of using fractal mathematical analysis to solve scientific and applied problems of modern biology and medicine. The authors show that only such an approach, related to the section of nonlinear mechanics, allows quantifying the chaotic component of the structure and function of living systems, that is a priori important additional information and expands, in particular, the possibilities of diagnostics, differential diagnosis and prediction of the course of physiological and pathological processes. A number of examples demonstrate the specific advantages of using fractal analysis for these purposes. The conclusion can be made that the expanded use of fractal analysis methods in the research work of medical and biological specialists is promising.


2021 ◽  
Vol 89 (3) ◽  
pp. 127-133 ◽  
Author(s):  
Aaron D. Goldman ◽  
Betul Kacar

AbstractThe RNA World is one of the most widely accepted hypotheses explaining the origin of the genetic system used by all organisms today. It proposes that the tripartite system of DNA, RNA, and proteins was preceded by one consisting solely of RNA, which both stored genetic information and performed the molecular functions encoded by that genetic information. Current research into a potential RNA World revolves around the catalytic properties of RNA-based enzymes, or ribozymes. Well before the discovery of ribozymes, Harold White proposed that evidence for a precursor RNA world could be found within modern proteins in the form of coenzymes, the majority of which contain nucleobases or nucleoside moieties, such as Coenzyme A and S-adenosyl methionine, or are themselves nucleotides, such as ATP and NADH (a dinucleotide). These coenzymes, White suggested, had been the catalytic active sites of ancient ribozymes, which transitioned to their current forms after the surrounding ribozyme scaffolds had been replaced by protein apoenzymes during the evolution of translation. Since its proposal four decades ago, this groundbreaking hypothesis has garnered support from several different research disciplines and motivated similar hypotheses about other classes of cofactors, most notably iron-sulfur cluster cofactors as remnants of the geochemical setting of the origin of life. Evidence from prebiotic geochemistry, ribozyme biochemistry, and evolutionary biology, increasingly supports these hypotheses. Certain coenzymes and cofactors may bridge modern biology with the past and can thus provide insights into the elusive and poorly-recorded period of the origin and early evolution of life.


2019 ◽  
Vol 374 (1786) ◽  
pp. 20190098 ◽  
Author(s):  
Chuan Ku ◽  
Arnau Sebé-Pedrós

Understanding the diversity and evolution of eukaryotic microorganisms remains one of the major challenges of modern biology. In recent years, we have advanced in the discovery and phylogenetic placement of new eukaryotic species and lineages, which in turn completely transformed our view on the eukaryotic tree of life. But we remain ignorant of the life cycles, physiology and cellular states of most of these microbial eukaryotes, as well as of their interactions with other organisms. Here, we discuss how high-throughput genome-wide gene expression analysis of eukaryotic single cells can shed light on protist biology. First, we review different single-cell transcriptomics methodologies with particular focus on microbial eukaryote applications. Then, we discuss single-cell gene expression analysis of protists in culture and what can be learnt from these approaches. Finally, we envision the application of single-cell transcriptomics to protist communities to interrogate not only community components, but also the gene expression signatures of distinct cellular and physiological states, as well as the transcriptional dynamics of interspecific interactions. Overall, we argue that single-cell transcriptomics can significantly contribute to our understanding of the biology of microbial eukaryotes. This article is part of a discussion meeting issue ‘Single cell ecology’.


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