Rates of DNA sequence evolution differ between taxonomic groups

Science ◽  
1986 ◽  
Vol 231 (4744) ◽  
pp. 1393-1398 ◽  
Author(s):  
R. Britten
Keyword(s):  
Dna Sequence ◽  
Sequence Evolution ◽  
Taxonomic Groups ◽  
Dna Sequence Evolution

Mixed Model Analysis of DNA Sequence Evolution

Biometrics ◽  
1995 ◽  
Vol 51 (2) ◽  
pp. 552 ◽  
Author(s):  
Ziheng Yang ◽  
Tianlin Wang
Keyword(s):  
Dna Sequence ◽  
Mixed Model ◽  
Model Analysis ◽  
Sequence Evolution ◽  
Mixed Model Analysis ◽  
Dna Sequence Evolution

DNA sequence evolution through Integral Value Transformations

2012 ◽  
Vol 4 (2) ◽  
pp. 128-132 ◽  
Author(s):  
Sk Sarif Hassan ◽  
Pabitra Pal Choudhury ◽  
Ranita Guha ◽  
Shantanav Chakraborty ◽  
Arunava Goswami
Keyword(s):  
Dna Sequence ◽  
Sequence Evolution ◽  
Dna Sequence Evolution

Probabilistic models of DNA sequence evolution with context dependent rates of substitution

2000 ◽  
Vol 32 (2) ◽  
pp. 499-517 ◽  
Author(s):  
Jens Ledet Jensen ◽  
Anne-Mette Krabbe Pedersen
Keyword(s):  
Dna Sequence ◽  
Probabilistic Models ◽  
Transition Probability ◽  
Process Models ◽  
Sequence Evolution ◽  
Mcmc Method ◽  
Normalizing Constant ◽  
A Site ◽  
Dna Sequence Evolution ◽  
Hiv 1

We consider Markov processes of DNA sequence evolution in which the instantaneous rates of substitution at a site are allowed to depend upon the states at the sites in a neighbourhood of the site at the instant of the substitution. We characterize the class of Markov process models of DNA sequence evolution for which the stationary distribution is a Gibbs measure, and give a procedure for calculating the normalizing constant of the measure. We develop an MCMC method for estimating the transition probability between sequences under models of this type. Finally, we analyse an alignment of two HIV-1 gene sequences using the developed theory and methodology.

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