scholarly journals Public good exploitation in natural bacterioplankton communities

2021 ◽  
Vol 7 (31) ◽  
pp. eabi4717
Author(s):  
Shaul Pollak ◽  
Matti Gralka ◽  
Yuya Sato ◽  
Julia Schwartzman ◽  
Lu Lu ◽  
...  

Bacteria often interact with their environment through extracellular molecules that increase access to limiting resources. These secretions can act as public goods, creating incentives for exploiters to invade and “steal” public goods away from producers. This phenomenon has been studied extensively in vitro, but little is known about the occurrence and impact of public good exploiters in the environment. Here, we develop a genomic approach to systematically identify bacteria that can exploit public goods produced during the degradation of polysaccharides. Focusing on chitin, a highly abundant marine biopolymer, we show that public good exploiters are active in natural chitin degrading microbial communities, invading early during colonization, and potentially hindering degradation. In contrast to in vitro studies, we find that exploiters and degraders belong to distant lineages, facilitating their coexistence. Our approach opens novel avenues to use the wealth of genomic data available to infer ecological roles and interactions among microbes.

2020 ◽  
Author(s):  
Shaul Pollak ◽  
Matti Gralka ◽  
Yuya Sato ◽  
Julia Schwartzman ◽  
Lu Lu ◽  
...  

AbstractPublic good exploitation has been studied extensively from an evolutionary lens, but little is known about the occurrence and impact of public good exploiters in natural communities. Here, we develop a reverse ecology approach to systematically identify bacteria that can exploit public goods produced during the degradation of polysaccharides. Focusing on chitin – the second most abundant biopolymer on the planet, we show that public good exploiters hinder the growth of degraders and invade marine microbial communities during early stages of colonization. Unlike cheaters in social evolution, exploiters and polysaccharide degraders (cooperators) come together by a process of community assembly, belong to distant lineages, and can stably coexist. Thus, our approach opens novel avenues to interpret the wealth of genomic data through an ecological lens.


2012 ◽  
Vol 4 ◽  
pp. IJIS.S9358
Author(s):  
Matthew Pelletier ◽  
Laura Leigh French ◽  
Stephen Trinidad ◽  
Kurt Vandock

The reversible mitochondrial transhydrogenase in Manduca sexta has been characterized and is involved with endocrine-mediated post-embryonic larval development in this model insect. While biochemical in vivo and in vitro studies have been accomplished, robust molecular studies of the transhydrogenase have not been possible due to deficient genomic data. In the present study, using a combination of degenerate oligonucleotide primers and raw genomic data, we have determined the structure and sequence of the transhydrogenase gene from the model insect Manduca sexta. The encoded protein is highly similar to other transhydrogenase proteins and this sequence is the first lepidopteran sequence reported to date.


2019 ◽  
Author(s):  
Felix Funk ◽  
Christoph Hauert

AbstractFrom the microscopic to the macroscopic level, biological life exhibits directed migration in response to environmental conditions. Chemotaxis enables microbes to sense and move towards nutrient-rich regions or to avoid toxic ones. Socio-economic factors drive human populations from rural to urban areas. However, migration affects the quantity and quality of desirable resources. The effect of collective movement is especially significant when in response to the generation of public goods. Microbial communities can, for instance, alter their environment through the secretion of extracellular substances. Some substances provide antibiotic-resistance, others provide access to nutrients or promote motility. However, in all cases the maintenance of such public goods requires costly cooperation and is consequently susceptible to exploitation. The threat of exploitation becomes even more acute with motile individuals as defectors can avoid the consequences of their cheating.Here, we propose a model to investigate the effects of targeted migration based on the production of ecological public goods and analyze the interplay between social conflicts and migration. In particular, individuals can locate attractive regions by moving towards higher cooperator densities or avoid unattractive regions by moving away from defectors. Both migration patterns not only shape an individual’s immediate environment but also affects the population as a whole. For example, defectors hunting cooperators in search of the public good have a homogenizing effect on population densities. They limit the production of the public good and hence inhibit the growth of the population. In contrast, aggregating cooperators promote the spontaneous formation of heterogeneous density distributions. The positive feedback between cooperator aggregation and public goods production, however, poses analytical and numerical challenges due to its tendency to develop discontinuous distributions. Thus, different modes of directed migration bear the potential to enhance or inhibit the emergence of complex and sometimes dynamic spatial arrangements. Interestingly, whenever patterns emerge in the form of heterogeneous density distributions, cooperation is promoted, on average, population densities rise, and the risk of extinction is reduced.Author summaryThe production and maintenance of shared environmental resources such as access to nutrients in microbial communities or potable water in human societies require the cooperation of groups of individuals. However, cooperation is costly and prone to exploitation. If too many individuals follow selfish interests and spoil their environment, the group and possibly the entire population suffers. Nevertheless, many forms of biological life – from humans to microbes – migrate in response to resource availability. Here, we analyze the interplay of the social conflict in public goods production and targeted migration. In particular, we find that aggregation of cooperators can enhance or trigger the spontaneous formation of heterogeneous spatial distributions, which promote cooperation and result in higher population densities. Conversely, attempts to avoid defectors increases the risk of extinction because it tends to homogenize population distributions and lower population densities.


2018 ◽  
Author(s):  
Katherine M. Antosca ◽  
Diana A. Chernikova ◽  
Kathryn L. Ruoff ◽  
Kewei Li ◽  
Margaret F. Guill ◽  
...  

AbstractPrevious work from our group indicated a connection between the gastrointestinal microbiota of infants and children with cystic fibrosis (CF) and airway disease in this population. Here we examine the stool microbiota of infants with CF and from the general population who did not have CF over the first year of life. CF children had reduced gastrointestinal Bacteroides and Bifidobacterium beginning in infancy, even after adjusting for antibiotic treatment. We also identify several metabolic pathways that are enriched or under represented among the microbial communities in the stool of these young patients with CF as compared to children without CF. In vitro studies demonstrated that exposure of the apical face of a polarized Intestinal cell line to Bacteroides thetaiotaomicron significantly reduced production of IL-8 secreted from both the apical and basolateral face of these cells, suggesting a mechanism whereby changes in the intestinal microflora could impact systemic inflammation. This work further establishes a link between gastrointestinal microbiota, systemic inflammation and airway disease, and presents the opportunity for therapeutic probiotic interventions.Significance statementThere is a surprising link between gastrointestinal microbial communities and airway disease progression in CF. Here we show that infants with CF ≤1 year of age show a distinct stool microbiota compared with children of a comparable age from a general population cohort. We detect associations between stool microbes and airway exacerbation events in the cohort of infants with CF, and in vitro studies provide a possible mechanism for this observation. These data argue that current therapeutics do not establish a healthy-like gastrointestinal microbiota in young patients with CF, and we suggest that interventions that direct the gastrointestinal microbiota closer to a healthy state may provide benefit to these patients.


2006 ◽  
Vol 15 (04) ◽  
pp. 245-257 ◽  
Author(s):  
H. J. Rolf ◽  
K. G. Wiese ◽  
H. Siggelkow ◽  
H. Schliephake ◽  
G. A. Bubernik

1968 ◽  
Vol 19 (03/04) ◽  
pp. 584-592 ◽  
Author(s):  
Hanna Lukasiewicz ◽  
S Niewiarowski

Summary and Conclusion1. It has been found that EACA does not inhibit activation of human plasminogen into plasmin by SK and UK in a concentration of 5 × 10–2 M. The activation of bovine plasminogen by SK and UK is inhibited by this concentration of EACA but not by a lower one.2. EACA in concentrations of 1,5 × 10–1 – 10–4 M does not inhibit casein proteolysis by plasmin. The proteolysis of fibrinogen and fibrin measured by the release of TCA soluble tyrosine is inhibited by EACA in concentrations of 1,5 × 10–1 – 10–2 M.3. The lysis of non-stabilized clots by plasmin measured in a test tube was inhibited by an EACA concentration of 5 × 10–3 – 5 × 10–4 M. The lysis of stabilized clots by plasmin was inhibited by an EACA concentration of 10–5 M.4. On the basis of experimental findings and data given in literature the authors postulate that the mechanism of the antifibrinolytic effects of EACA consists mainly in a modification of plasmin action on fibrin. These effects are dependent on the structure of the fibrin clots.


1969 ◽  
Vol 21 (02) ◽  
pp. 234-244 ◽  
Author(s):  
N Mackay ◽  
J.C Ferguson ◽  
Antonia Bagshawe ◽  
A.T.T Forrester ◽  
G.P Mcnicol
Keyword(s):  

SummaryAn account is given of the effects of boomslang venom in man. Evidence was found of a fibrinolytic state apparently secondary to the coagulant action of the venom. These features rapidly responded to the administration of specific antivenom. In vitro studies, using a homogenate of boomslang parotids, confirmed the coagulant properties of the venom and showed them to be of much greater potency than the proteolytic actions.


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