scholarly journals Parity and time reversal elucidate both decision-making in empirical models and attractor scaling in critical Boolean networks

2021 ◽  
Vol 7 (29) ◽  
pp. eabf8124
Author(s):  
Jordan C. Rozum ◽  
Jorge Gómez Tejeda Zañudo ◽  
Xiao Gan ◽  
Dávid Deritei ◽  
Réka Albert

We present new applications of parity inversion and time reversal to the emergence of complex behavior from simple dynamical rules in stochastic discrete models. Our parity-based encoding of causal relationships and time-reversal construction efficiently reveal discrete analogs of stable and unstable manifolds. We demonstrate their predictive power by studying decision-making in systems biology and statistical physics models. These applications underpin a novel attractor identification algorithm implemented for Boolean networks under stochastic dynamics. Its speed enables resolving a long-standing open question of how attractor count in critical random Boolean networks scales with network size and whether the scaling matches biological observations. Via 80-fold improvement in probed network size (N = 16,384), we find the unexpectedly low scaling exponent of 0.12 ± 0.05, approximately one-tenth the analytical upper bound. We demonstrate a general principle: A system’s relationship to its time reversal and state-space inversion constrains its repertoire of emergent behaviors.

2020 ◽  
Author(s):  
Michele Braccini ◽  
Andrea Roli ◽  
Marco Villani ◽  
Roberto Serra

Abstract In this work, we explore the properties of a control mechanism exerted on random Boolean networks that takes inspiration from the methylation mechanisms in cell differentiation and consists in progressively freezing (i.e. clamping to 0) some nodes of the network. We study the main dynamical properties of this mechanism both theoretically and in simulation. In particular, we show that when applied to random Boolean networks, it makes it possible to attain dynamics and path dependence typical of biological cells undergoing differentiation.


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