scholarly journals Synchrony suppression in complex stimulus responses of a biophysical model of the cochlea

1987 ◽  
Vol 81 (5) ◽  
pp. 1486-1498 ◽  
Author(s):  
Shihab A. Shamma ◽  
Kathleen A. Morrish
Keyword(s):  
Biophysical Model ◽  
Complex Stimulus

Directional hearing in grasshoppers: neurophysiological testing of a bioacoustic model

1999 ◽  
Vol 202 (2) ◽  
pp. 121-133 ◽  
Author(s):  
J. Schul ◽  
M. Holderied ◽  
D.V. Helversen ◽  
O.V. Helversen
Keyword(s):  
Schistocerca Gregaria ◽  
Neuronal Response ◽  
Individual Variability ◽  
Biophysical Model ◽  
Directional Hearing ◽  
Complex Stimulus ◽  
Directional Information ◽  
Model Calculations ◽  
Chorthippus Biguttulus ◽  
Nerve Recordings

A recently proposed biophysical model for directional hearing in grasshoppers was tested using complex stimulus situations, with two loudspeakers, one on either side of the animal, synchronously emitting sinusoids with defined phase and amplitude relationships. Hearing responses were determined from whole nerve recordings and compared with the predictions of the model. In Schistocerca gregaria, there were only minor differences between the predictions of the model and measurements and, by reducing the value of the gain of the internal sound path measured previously, a close agreement was achieved between model and measured hearing responses. In Chorthippus biguttulus, larger discrepancies between model calculations using the values measured previously and neuronal response functions were found in both shape and amplitude. A better fit between measurements and model predictions was achieved by increasing the values of the internal delay over those measured previously. The measurements presented here indicate high inter-individual variability of the parameters of the internal pathway, with a range of 60 degrees for the internal phase delay. Calculating the directional characteristics using this range of values for the internal delay indicated that sufficient directional information was available down to 5 kHz. Increasing the value of the internal delay over that measured in an earlier study therefore provides an explanation for the discrepancy between the poor directional information attributed to C. biguttulus in that study and the excellent lateralization ability of males of this species at 5 kHz.

scholarly journals Biofilm Lithography enables high-resolution cell patterning via optogenetic adhesin expression

2018 ◽  
Vol 115 (14) ◽  
pp. 3698-3703 ◽  
Author(s):  
Xiaofan Jin ◽  
Ingmar H. Riedel-Kruse
Keyword(s):  
Escherichia Coli ◽  
Cell Patterning ◽  
Biophysical Model ◽  
Microbial Consortia ◽  
Bacterial Biofilms ◽  
Surface Pretreatment ◽  
Resolution Cell ◽  
Stimulation Of

Bacterial biofilms represent a promising opportunity for engineering of microbial communities. However, our ability to control spatial structure in biofilms remains limited. Here we engineerEscherichia coliwith a light-activated transcriptional promoter (pDawn) to optically regulate expression of an adhesin gene (Ag43). When illuminated with patterned blue light, long-term viable biofilms with spatial resolution down to 25 μm can be formed on a variety of substrates and inside enclosed culture chambers without the need for surface pretreatment. A biophysical model suggests that the patterning mechanism involves stimulation of transiently surface-adsorbed cells, lending evidence to a previously proposed role of adhesin expression during natural biofilm maturation. Overall, this tool—termed “Biofilm Lithography”—has distinct advantages over existing cell-depositing/patterning methods and provides the ability to grow structured biofilms, with applications toward an improved understanding of natural biofilm communities, as well as the engineering of living biomaterials and bottom–up approaches to microbial consortia design.

scholarly journals Global earthworm distribution and activity windows based on soil hydromechanical constraints

2021 ◽  
Vol 4 (1) ◽  
Author(s):  
Siul A. Ruiz ◽  
Samuel Bickel ◽  
Dani Or
Keyword(s):  
Soil Structure ◽  
Mechanistic Model ◽  
Biophysical Model ◽  
Ecosystem Functions ◽  
Soil Conditions ◽  
Agricultural Systems ◽  
Occurrence Patterns ◽  
Additional Constraints ◽  
Earthworm Activity ◽  
Good Agreement

AbstractEarthworm activity modifies soil structure and promotes important hydrological ecosystem functions for agricultural systems. Earthworms use their flexible hydroskeleton to burrow and expand biopores. Hence, their activity is constrained by soil hydromechanical conditions that permit deformation at earthworm’s maximal hydroskeletal pressure (≈200kPa). A mechanistic biophysical model is developed here to link the biomechanical limits of earthworm burrowing with soil moisture and texture to predict soil conditions that permit bioturbation across biomes. We include additional constraints that exclude earthworm activity such as freezing temperatures, low soil pH, and high sand content to develop the first predictive global map of earthworm habitats in good agreement with observed earthworm occurrence patterns. Earthworm activity is strongly constrained by seasonal dynamics that vary across latitudes largely due to soil hydromechanical status. The mechanistic model delineates the potential for earthworm migration via connectivity of hospitable sites and highlights regions sensitive to climate.

scholarly journals Perception of Aqueous Ethanol Binary Mixtures Containing Alcohol-Relevant Taste and Chemesthetic Stimuli

Beverages ◽  
2021 ◽  
Vol 7 (2) ◽  
pp. 23
Author(s):  
Margaret Thibodeau ◽  
Gary Pickering
Keyword(s):  
Binary Mixture ◽  
Binary Mixtures ◽  
Aqueous Ethanol ◽  
Ethanol Concentration ◽  
Alcoholic Beverages ◽  
Complex Stimulus ◽  
Aluminium Sulphate ◽  
Binary Solutions ◽  
Wide Range ◽  
Thermal Taste

Ethanol is a complex stimulus that elicits multiple gustatory and chemesthetic sensations. Alcoholic beverages also contain other tastants that impact flavour. Here, we sought to characterize the binary interactions between ethanol and four stimuli representing the dominant orosensations elicited in alcoholic beverages: fructose (sweet), quinine (bitter), tartaric acid (sour) and aluminium sulphate (astringent). Female participants were screened for thermal taste status to determine whether the heightened orosensory responsiveness of thermal tasters (n = 21–22) compared to thermal non-tasters (n = 13–15) extends to these binary mixtures. Participants rated the intensity of five orosensations in binary solutions of ethanol (5%, 13%, 23%) and a tastant (low, medium, high). For each tastant, 3-way ANOVAs determined which factors impacted orosensory ratings. Burning/tingling increased as ethanol concentration increased in all four binary mixture types and was not impacted by the concentration of other stimuli. In contrast, bitterness increased with ethanol concentration, and decreased with increasing fructose concentration. Sourness tended to be reduced as ethanol concentration increased, although astringency intensity decreased with increasing concentration of fructose. Overall, thermal tasters tended to be more responsive than thermal non-tasters. These results provide insights into how the taste and chemesthetic profiles of alcoholic beverages across a wide range of ethanol concentrations can be manipulated by changing their composition.

scholarly journals A model of on/off transitions in neurons of the deep cerebellar nuclei: deciphering the underlying ionic mechanisms

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Hugues Berry ◽  
Stéphane Genet
Keyword(s):  
Cerebellar Nuclei ◽  
Biophysical Model ◽  
High Threshold ◽  
Deep Cerebellar Nuclei ◽  
Functional Link ◽  
Electrophysiological Properties ◽  
Voltage Dependent ◽  
Ionic Mechanisms ◽  
The Central Nervous System ◽  
Overall Functioning

AbstractThe neurons of the deep cerebellar nuclei (DCNn) represent the main functional link between the cerebellar cortex and the rest of the central nervous system. Therefore, understanding the electrophysiological properties of DCNn is of fundamental importance to understand the overall functioning of the cerebellum. Experimental data suggest that DCNn can reversibly switch between two states: the firing of spikes (F state) and a stable depolarized state (SD state). We introduce a new biophysical model of the DCNn membrane electro-responsiveness to investigate how the interplay between the documented conductances identified in DCNn give rise to these states. In the model, the F state emerges as an isola of limit cycles, i.e. a closed loop of periodic solutions disconnected from the branch of SD fixed points. This bifurcation structure endows the model with the ability to reproduce the $\text{F}\to \text{SD}$ F → SD transition triggered by hyperpolarizing current pulses. The model also reproduces the $\text{F}\to \text{SD}$ F → SD transition induced by blocking Ca currents and ascribes this transition to the blocking of the high-threshold Ca current. The model suggests that intracellular current injections can trigger fully reversible $\text{F}\leftrightarrow \text{SD}$ F ↔ SD transitions. Investigation of low-dimension reduced models suggests that the voltage-dependent Na current is prominent for these dynamical features. Finally, simulations of the model suggest that physiological synaptic inputs may trigger $\text{F}\leftrightarrow \text{SD}$ F ↔ SD transitions. These transitions could explain the puzzling observation of positively correlated activities of connected Purkinje cells and DCNn despite the former inhibit the latter.

Prediction study on the spatiotemporal distribution of Yesso scallop larvae based on a coupled biophysical model

Aquaculture ◽  
2021 ◽  
pp. 736598
Author(s):  
Qiaofeng Ma ◽  
Yunkuan Han ◽  
Yanbin Xi ◽  
Jingming Huang ◽  
Zhaojun Sheng ◽  
...  
Keyword(s):  
Spatiotemporal Distribution ◽  
Biophysical Model ◽  
Yesso Scallop ◽  
Scallop Larvae

scholarly journals Dynamic modulation of spike timing-dependent calcium influx during corticostriatal upstates

2013 ◽  
Vol 110 (7) ◽  
pp. 1631-1645 ◽  
Author(s):  
R. C. Evans ◽  
Y. M. Maniar ◽  
K. T. Blackwell
Keyword(s):  
Synaptic Plasticity ◽  
Slow Wave Sleep ◽  
Calcium Influx ◽  
Spike Timing ◽  
Medium Spiny Neuron ◽  
Calcium Transients ◽  
Biophysical Model ◽  
Published Data ◽  
High Calcium

The striatum of the basal ganglia demonstrates distinctive upstate and downstate membrane potential oscillations during slow-wave sleep and under anesthetic. The upstates generate calcium transients in the dendrites, and the amplitude of these calcium transients depends strongly on the timing of the action potential (AP) within the upstate. Calcium is essential for synaptic plasticity in the striatum, and these large calcium transients during the upstates may control which synapses undergo plastic changes. To investigate the mechanisms that underlie the relationship between calcium and AP timing, we have developed a realistic biophysical model of a medium spiny neuron (MSN). We have implemented sophisticated calcium dynamics including calcium diffusion, buffering, and pump extrusion, which accurately replicate published data. Using this model, we found that either the slow inactivation of dendritic sodium channels (NaSI) or the calcium inactivation of voltage-gated calcium channels (CDI) can cause high calcium corresponding to early APs and lower calcium corresponding to later APs. We found that only CDI can account for the experimental observation that sensitivity to AP timing is dependent on NMDA receptors. Additional simulations demonstrated a mechanism by which MSNs can dynamically modulate their sensitivity to AP timing and show that sensitivity to specifically timed pre- and postsynaptic pairings (as in spike timing-dependent plasticity protocols) is altered by the timing of the pairing within the upstate. These findings have implications for synaptic plasticity in vivo during sleep when the upstate-downstate pattern is prominent in the striatum.

scholarly journals Occupant behaviour and thermal comfort in buildings: Monitoring the end user

2019 ◽  
Vol 111 ◽  
pp. 04056
Author(s):  
Loes Visser ◽  
Boris Kingma ◽  
Eric Willems ◽  
Wendy Broers ◽  
Marcel Loomans ◽  
...  
Keyword(s):  
Thermal Comfort ◽  
Energy Performance ◽  
The Body ◽  
Activity Level ◽  
Biophysical Model ◽  
Zone Model ◽  
Occupant Behaviour ◽  
Ambient Conditions ◽  
Skin Temperatures ◽  
Thermoregulatory Behaviour

Studies indicate that the energy performance gap between real and calculated energy use can be explained for 80% by occupant behaviour. This human factor may be composed of routine and thermoregulatory behaviour. When occupants do not feel comfortable due to high or low operative temperatures and resulting high or low skin temperatures, they are likely to exhibit thermoregulatory behaviour. The aim of this study is to monitor and understand this thermoregulatory behaviour of the occupant. This is a detailed study of two females living in a rowhouse in the city of Heerlen (Netherlands). During a monitoring period of three weeks over a time span of three months the following parameters were monitored: activity level, clothing, micro climate, skin temperatures and thermal comfort and sensation. Their micro climate was measured at five positions on the body to assess exposed near body conditions and skin temperature. Every two hours they filled in a questionnaire regarding their thermal comfort and sensation level (7-point scale), clothing, activities and thermoregulatory behaviour. The most comfortable (optimal) temperature was calculated for each person by adopting a biophysical model, a thermoneutral zone model. This study shows unique indivual comfort patterns in relation to ambient conditions. An example is given how this information can be used to calculate the buildings energy comsumption.

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