Gene expression pattern recognition algorithm inferences to classify samples exposed to chemical agents

2002 ◽  
Author(s):  
Pierre R. Bushel ◽  
Lee Bennett ◽  
Hisham Hamadeh ◽  
James Green ◽  
Alan Ableson ◽  
...  
Keyword(s):  
Gene Expression ◽  
Pattern Recognition ◽  
Expression Pattern ◽  
Gene Expression Pattern ◽  
Recognition Algorithm ◽  
Pattern Recognition Algorithm ◽  
Chemical Agents

scholarly journals Gene Expression Pattern of Peyer’s Patch Lymphocytes Exposed to Kagocel Suggests Pattern-Recognition Receptors Mediate Its Action

2021 ◽  
Vol 12 ◽  
Author(s):  
Alexander A. Andreev-Andrievskiy ◽  
Roman A. Zinovkin ◽  
Mikhail A. Mashkin ◽  
Olga Yu. Frolova ◽  
Yuriy G. Kazaishvili ◽  
...  
Keyword(s):  
Gene Expression ◽  
Pattern Recognition ◽  
Expression Pattern ◽  
Concanavalin A ◽  
Bioinformatics Analysis ◽  
Gene Expression Pattern ◽  
Pattern Recognition Receptors ◽  
Immune Defense ◽  
Peyer's Patches ◽  
Peyer’S Patches

Kagocel is a synthetic carboxymethylcellulose derivative copolymerized with gossypol. Clinical data evidence its safety and efficiency for the treatment of flu and other viral infections via enhancement of interferon production. The gut-associated lymphoid tissue seems a likely site of kagocel action. The study was aimed to investigate the molecular mechanisms of its action using murine Peyer’s patches lymphocytes as a test system and the cytokines production and gene expression patterns as the primary outcomes. The Peyer’s patches lymphocytes isolated from BALB/c mice were stimulated with concanavalin A, or, to mimic viral infection, with a combination of concanavalin A and TLR3 ligand poly I:C. After 24 h of stimulation the cells were treated with saline, 30, 100, or 300 μg/ml of kagocel, or, as positive controls, 300 μg/ml oats b-D-glucan or 300 μg/ml lentinan. After 24 and 72 h of incubation with these drugs cytokines production was analyzed with ELISA and gene expression pattern was investigated using nCounter Inflammation panel chips followed by bioinformatics analysis. Expression of genes involved in the inflammatory response, antiviral defense, lymphocytes survival and proliferation (C1qa, C2, C3, Ccl21a, Il11, Il1b, Il23a, Il5, Ltb4r2, Alox15, Pla2g4a, Ptger1, Mapkapk5, Hras, Ifna1, Tlr2, Mrc1, Mx2) was upregulated in kagocel-treated Peyer’s patches lymphocytes. A list of plausible transcription factors (CEBPs, IRF, NFκB, RXR, Stat, Tead4, and ZSCAN) and master-regulators has been identified (cIAP, CIKS, dock9, MEKK1, FXR, IKK, IRAK, TRAF, dsRNA:TLR3:TRIF). The changes in gene expression pattern and the outcomes of bioinformatics analysis suggest that pattern recognition receptors, TLRs and dectin-1, are the key mediators of kagocel immunomodulatory action, with the possible involvement of interferon autocrine loop. The genes upregulated with kagocel include diverse components of the innate immune defense system.

Sign in / Sign up

Export Citation Format

Share Document