scholarly journals Diagnosing COVID-19 pneumonia from x-ray and CT images using deep learning and transfer learning algorithms

2021 ◽  
Author(s):  
Halgurd Maghdid ◽  
Aras T. Asaad ◽  
Kayhan Zrar Ghafoor Ghafoor ◽  
Ali S. Sadiq ◽  
Seyedali Mirjalili ◽  
...  
Keyword(s):  
Deep Learning ◽  
Transfer Learning ◽  
Learning Algorithms ◽  
Ct Images ◽  
X Ray

scholarly journals Vulnerability in Deep Transfer Learning Models to Adversarial Fast Gradient Sign Attack for COVID-19 Prediction from Chest Radiography Images

2021 ◽  
Vol 11 (9) ◽  
pp. 4233
Author(s):  
Biprodip Pal ◽  
Debashis Gupta ◽  
Md. Rashed-Al-Mahfuz ◽  
Salem A. Alyami ◽  
Mohammad Ali Moni
Keyword(s):  
Deep Learning ◽  
Transfer Learning ◽  
Chest Radiography ◽  
High Sensitivity ◽  
Ct Images ◽  
Classification Performance ◽  
Learning Models ◽  
X Ray ◽  
Image Capturing ◽  
Fast Gradient

The COVID-19 pandemic requires the rapid isolation of infected patients. Thus, high-sensitivity radiology images could be a key technique to diagnose patients besides the polymerase chain reaction approach. Deep learning algorithms are proposed in several studies to detect COVID-19 symptoms due to the success in chest radiography image classification, cost efficiency, lack of expert radiologists, and the need for faster processing in the pandemic area. Most of the promising algorithms proposed in different studies are based on pre-trained deep learning models. Such open-source models and lack of variation in the radiology image-capturing environment make the diagnosis system vulnerable to adversarial attacks such as fast gradient sign method (FGSM) attack. This study therefore explored the potential vulnerability of pre-trained convolutional neural network algorithms to the FGSM attack in terms of two frequently used models, VGG16 and Inception-v3. Firstly, we developed two transfer learning models for X-ray and CT image-based COVID-19 classification and analyzed the performance extensively in terms of accuracy, precision, recall, and AUC. Secondly, our study illustrates that misclassification can occur with a very minor perturbation magnitude, such as 0.009 and 0.003 for the FGSM attack in these models for X-ray and CT images, respectively, without any effect on the visual perceptibility of the perturbation. In addition, we demonstrated that successful FGSM attack can decrease the classification performance to 16.67% and 55.56% for X-ray images, as well as 36% and 40% in the case of CT images for VGG16 and Inception-v3, respectively, without any human-recognizable perturbation effects in the adversarial images. Finally, we analyzed that correct class probability of any test image which is supposed to be 1, can drop for both considered models and with increased perturbation; it can drop to 0.24 and 0.17 for the VGG16 model in cases of X-ray and CT images, respectively. Thus, despite the need for data sharing and automated diagnosis, practical deployment of such program requires more robustness.

scholarly journals Integrating Machine/Deep Learning Methods and Filtering Techniques for Reliable Mineral Phase Segmentation of 3D X-ray Computed Tomography Images

Energies ◽  
2021 ◽  
Vol 14 (15) ◽  
pp. 4595
Author(s):  
Parisa Asadi ◽  
Lauren E. Beckingham
Keyword(s):  
Machine Learning ◽  
Deep Learning ◽  
Random Forest ◽  
Ct Images ◽  
Ct Imaging ◽  
Learning Method ◽  
Learning Methods ◽  
X Ray ◽  
Machine Learning Methods ◽  
Filtering Techniques

X-ray CT imaging provides a 3D view of a sample and is a powerful tool for investigating the internal features of porous rock. Reliable phase segmentation in these images is highly necessary but, like any other digital rock imaging technique, is time-consuming, labor-intensive, and subjective. Combining 3D X-ray CT imaging with machine learning methods that can simultaneously consider several extracted features in addition to color attenuation, is a promising and powerful method for reliable phase segmentation. Machine learning-based phase segmentation of X-ray CT images enables faster data collection and interpretation than traditional methods. This study investigates the performance of several filtering techniques with three machine learning methods and a deep learning method to assess the potential for reliable feature extraction and pixel-level phase segmentation of X-ray CT images. Features were first extracted from images using well-known filters and from the second convolutional layer of the pre-trained VGG16 architecture. Then, K-means clustering, Random Forest, and Feed Forward Artificial Neural Network methods, as well as the modified U-Net model, were applied to the extracted input features. The models’ performances were then compared and contrasted to determine the influence of the machine learning method and input features on reliable phase segmentation. The results showed considering more dimensionality has promising results and all classification algorithms result in high accuracy ranging from 0.87 to 0.94. Feature-based Random Forest demonstrated the best performance among the machine learning models, with an accuracy of 0.88 for Mancos and 0.94 for Marcellus. The U-Net model with the linear combination of focal and dice loss also performed well with an accuracy of 0.91 and 0.93 for Mancos and Marcellus, respectively. In general, considering more features provided promising and reliable segmentation results that are valuable for analyzing the composition of dense samples, such as shales, which are significant unconventional reservoirs in oil recovery.

Automated pneumonia detection on chest X-ray images: A deep learning approach with different optimizers and transfer learning architectures

Measurement ◽  
2021 ◽  
pp. 109953
Author(s):  
Adhiyaman Manickam ◽  
Jianmin Jiang ◽  
Yu Zhou ◽  
Abhinav Sagar ◽  
Rajkumar Soundrapandiyan ◽  
...  
Keyword(s):  
Deep Learning ◽  
Transfer Learning ◽  
Learning Approach ◽  
X Ray ◽  
Chest X Ray ◽  
Learning Architectures

Deep Learning Enabled Deblurring of Computed Tomography Images of Porous Media

2021 ◽  
Author(s):  
Khalid Labib Alsamadony ◽  
Ertugrul Umut Yildirim ◽  
Guenther Glatz ◽  
Umair bin Waheed ◽  
Sherif M. Hanafy
Keyword(s):  
Computed Tomography ◽  
Image Quality ◽  
Transfer Learning ◽  
Temporal Resolution ◽  
Exposure Time ◽  
Ct Images ◽  
Loss Functions ◽  
High Quality ◽  
X Ray ◽  
Training Images

Abstract Computed tomography (CT) is an important tool to characterize rock samples allowing quantification of physical properties in 3D and 4D. The accuracy of a property delineated from CT data is strongly correlated with the CT image quality. In general, high-quality, lower noise CT Images mandate greater exposure times. With increasing exposure time, however, more wear is put on the X-Ray tube and longer cooldown periods are required, inevitably limiting the temporal resolution of the particular phenomena under investigation. In this work, we propose a deep convolutional neural network (DCNN) based approach to improve the quality of images collected during reduced exposure time scans. First, we convolve long exposure time images from medical CT scanner with a blur kernel to mimic the degradation caused because of reduced exposure time scanning. Subsequently, utilizing the high- and low-quality scan stacks, we train a DCNN. The trained network enables us to restore any low-quality scan for which high-quality reference is not available. Furthermore, we investigate several factors affecting the DCNN performance such as the number of training images, transfer learning strategies, and loss functions. The results indicate that the number of training images is an important factor since the predictive capability of the DCNN improves as the number of training images increases. We illustrate, however, that the requirement for a large training dataset can be reduced by exploiting transfer learning. In addition, training the DCNN on mean squared error (MSE) as a loss function outperforms both mean absolute error (MAE) and Peak signal-to-noise ratio (PSNR) loss functions with respect to image quality metrics. The presented approach enables the prediction of high-quality images from low exposure CT images. Consequently, this allows for continued scanning without the need for X-Ray tube to cool down, thereby maximizing the temporal resolution. This is of particular value for any core flood experiment seeking to capture the underlying dynamics.

scholarly journals Certain Investigations on the Application of Machine learning Algorithms and Deep Learning Architectures for Covid -19 Diagnosis

2021 ◽  
Author(s):  
Soundariya R.S. ◽  
◽  
Tharsanee R.M. ◽  
Vishnupriya B ◽  
Ashwathi R ◽  
...  
Keyword(s):  
Machine Learning ◽  
Deep Learning ◽  
Mathematical Models ◽  
Ct Scan ◽  
Virus Disease ◽  
Learning Algorithms ◽  
Machine Learning Algorithms ◽  
X Ray ◽  
Laboratory Test Results ◽  
Learning Architectures

Corona virus disease (Covid - 19) has started to promptly spread worldwide from April 2020 till date, leading to massive death and loss of lives of people across various countries. In accordance to the advices of WHO, presently the diagnosis is implemented by Reverse Transcription Polymerase Chain Reaction (RT- PCR) testing, that incurs four to eight hours’ time to process test samples and adds 48 hours to categorize whether the samples are positive or negative. It is obvious that laboratory tests are time consuming and hence a speedy and prompt diagnosis of the disease is extremely needed. This can be attained through several Artificial Intelligence methodologies for prior diagnosis and tracing of corona diagnosis. Those methodologies are summarized into three categories: (i) Predicting the pandemic spread using mathematical models (ii) Empirical analysis using machine learning models to forecast the global corona transition by considering susceptible, infected and recovered rate. (iii) Utilizing deep learning architectures for corona diagnosis using the input data in the form of X-ray images and CT scan images. When X-ray and CT scan images are taken into account, supplementary data like medical signs, patient history and laboratory test results can also be considered while training the learning model and to advance the testing efficacy. Thus the proposed investigation summaries the several mathematical models, machine learning algorithms and deep learning frameworks that can be executed on the datasets to forecast the traces of COVID-19 and detect the risk factors of coronavirus.

On Data Bias and the Usability of Deep Learning Algorithms in Classifying COVID-19 based on Chest X-ray

2021 ◽  
Author(s):  
Hassane Ezzeddine ◽  
Mariette Awad ◽  
Alain S. Abi Ghanem ◽  
Bassem Mourani
Keyword(s):  
Deep Learning ◽  
Learning Algorithms ◽  
X Ray ◽  
Chest X Ray

scholarly journals Evaluation of Scalability and Degree of Fine-Tuning of Deep Convolutional Neural Networks for COVID-19 Screening on Chest X-ray Images Using Explainable Deep-Learning Algorithm

2020 ◽  
Vol 10 (4) ◽  
pp. 213 ◽  
Author(s):  
Ki-Sun Lee ◽  
Jae Young Kim ◽  
Eun-tae Jeon ◽  
Won Suk Choi ◽  
Nan Hee Kim ◽  
...  
Keyword(s):  
Deep Learning ◽  
Learning Strategies ◽  
Transfer Learning ◽  
Learning Algorithm ◽  
Fine Tuning ◽  
Deep Convolutional Neural Networks ◽  
X Ray ◽  
Backbone Network ◽  
Deep Learning Algorithm ◽  
Chest X Ray

According to recent studies, patients with COVID-19 have different feature characteristics on chest X-ray (CXR) than those with other lung diseases. This study aimed at evaluating the layer depths and degree of fine-tuning on transfer learning with a deep convolutional neural network (CNN)-based COVID-19 screening in CXR to identify efficient transfer learning strategies. The CXR images used in this study were collected from publicly available repositories, and the collected images were classified into three classes: COVID-19, pneumonia, and normal. To evaluate the effect of layer depths of the same CNN architecture, CNNs called VGG-16 and VGG-19 were used as backbone networks. Then, each backbone network was trained with different degrees of fine-tuning and comparatively evaluated. The experimental results showed the highest AUC value to be 0.950 concerning COVID-19 classification in the experimental group of a fine-tuned with only 2/5 blocks of the VGG16 backbone network. In conclusion, in the classification of medical images with a limited number of data, a deeper layer depth may not guarantee better results. In addition, even if the same pre-trained CNN architecture is used, an appropriate degree of fine-tuning can help to build an efficient deep learning model.

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