Development of large field-of-view two photon microscopy for imaging mouse cortex (Conference Presentation)

2017 ◽  
Author(s):  
Jonathan Bumstead ◽  
Daniel C. Côté ◽  
Joseph P. Culver
Keyword(s):  
Field Of View ◽  
Large Field ◽  
Two Photon Microscopy ◽  
Two Photon ◽  
Mouse Cortex

scholarly journals A spatio-temporally compensated acousto-optic scanner for two-photon microscopy providing large field of view

2008 ◽  
Vol 16 (14) ◽  
pp. 10066 ◽  
Author(s):  
Y. Kremer ◽  
J.-F. Léger ◽  
R. Lapole ◽  
N. Honnorat ◽  
Y. Candela ◽  
...  
Keyword(s):  
Field Of View ◽  
Large Field ◽  
Two Photon Microscopy ◽  
Two Photon

Designing large field-of-view two photon microscopy using optical invariant analysis and off-the-shelf components

2017 ◽  
Author(s):  
Jonathan R. Bumstead ◽  
Isaac A. Rosen ◽  
Andrew W. Kraft ◽  
Patrick W. Wright ◽  
Daniel Côté ◽  
...  
Keyword(s):  
Field Of View ◽  
Large Field ◽  
Two Photon Microscopy ◽  
Two Photon ◽  
Invariant Analysis

scholarly journals Ultra-large field-of-view two-photon microscopy

2015 ◽  
Vol 23 (11) ◽  
pp. 13833 ◽  
Author(s):  
Philbert S. Tsai ◽  
Celine Mateo ◽  
Jeffrey J. Field ◽  
Chris B. Schaffer ◽  
Matthew E. Anderson ◽  
...  
Keyword(s):  
Field Of View ◽  
Large Field ◽  
Two Photon Microscopy ◽  
Two Photon

scholarly journals Publisher Correction: Miniature two-photon microscopy for enlarged field-of-view, multi-plane and long-term brain imaging

2021 ◽  
Vol 18 (2) ◽  
pp. 220-220
Author(s):  
Weijian Zong ◽  
Runlong Wu ◽  
Shiyuan Chen ◽  
Junjie Wu ◽  
Hanbin Wang ◽  
...  
Keyword(s):  
Brain Imaging ◽  
Field Of View ◽  
Two Photon Microscopy ◽  
Two Photon

scholarly journals Microvascular Sprouting, Extension, and Creation of New Capillary Connections with Adaptation of the Neighboring Astrocytes in Adult Mouse Cortex under Chronic Hypoxia

2013 ◽  
Vol 34 (2) ◽  
pp. 325-331 ◽  
Author(s):  
Kazuto Masamoto ◽  
Hiroyuki Takuwa ◽  
Chie Seki ◽  
Junko Taniguchi ◽  
Yoshiaki Itoh ◽  
...  
Keyword(s):  
Adult Mouse ◽  
Fluorescent Protein ◽  
Vascular Endothelial Cells ◽  
Three Dimensional ◽  
Vascular Endothelial ◽  
Two Photon Microscopy ◽  
Two Photon ◽  
Mouse Cortex ◽  
Hypoxia Adaptation ◽  
Green Fluorescent

The present study aimed to determine the spatiotemporal dynamics of microvascular and astrocytic adaptation during hypoxia-induced cerebral angiogenesis. Adult C57BL/6J and Tie2-green fluorescent protein (GFP) mice with vascular endothelial cells expressing GFP were exposed to normobaric hypoxia for 3 weeks, whereas the three-dimensional microvessels and astrocytes were imaged repeatedly using two-photon microscopy. After 7 to14 days of hypoxia, a vessel sprout appeared from the capillaries with a bump-like head shape (mean diameter 14  μm), and stagnant blood cells were seen inside the sprout. However, no detectable changes in the astrocyte morphology were observed for this early phase of the hypoxia adaptation. More than 50% of the sprouts emerged from capillaries 60  μm away from the center penetrating arteries, which indicates that the capillary distant from the penetrating arteries is a favored site for sprouting. After 14 to 21 days of hypoxia, the sprouting vessels created a new connection with an existing capillary. In this phase, the shape of the new vessel and its blood flow were normalized, and the outside of the vessels were wrapped with numerous processes from the neighboring astrocytes. The findings indicate that hypoxia-induced cerebral angiogenesis provokes the adaptation of neighboring astrocytes, which may stabilize the blood–brain barrier in immature vessels.

Intravital multiphoton microscopy of dynamic renal processes

2005 ◽  
Vol 288 (6) ◽  
pp. F1084-F1089 ◽  
Author(s):  
Bruce A. Molitoris ◽  
Ruben M. Sandoval
Keyword(s):  
Proximal Tubule ◽  
Multiphoton Microscopy ◽  
Field Of View ◽  
Glomerular Permeability ◽  
Structural Alterations ◽  
Two Photon Microscopy ◽  
Two Photon ◽  
Dynamic Events ◽  
Subcellular Resolution ◽  
Functioning Kidney

Recent advances in microscopy and optics, computer sciences, and the available fluorophores used to label molecules of interest have empowered investigators to utilize intravital two-photon microscopy to study the dynamic events within the functioning kidney. This emerging technique enables investigators to follow functional and structural alterations with subcellular resolution within the same field of view over seconds to weeks. This approach invigorates the validity of data and facilitates analysis and interpretation as trends are more readily determined when one is more closely monitoring indicative physiological parameters. Therefore, in this review we emphasize how specific approaches will enable studies into glomerular permeability, proximal tubule endocytosis, and microvascular function within the kidney. We attempt to show how visual data can be quantified, thus allowing enhanced understanding of the process under study. Finally, emphasis is given to the possible future opportunities of this technology and its present limitations.

scholarly journals NoRMCorre: An online algorithm for piecewise rigid motion correction of calcium imaging data

2017 ◽  
Author(s):  
Eftychios A. Pnevmatikakis ◽  
Andrea Giovannucci
Keyword(s):  
Calcium Imaging ◽  
Motion Correction ◽  
Rigid Motion ◽  
Motion Artifacts ◽  
Streaming Data ◽  
Field Of View ◽  
Large Field ◽  
Motion Field ◽  
Imaging Data ◽  
Two Photon

AbstractBackgroundMotion correction is a challenging pre-processing problem that arises early in the analysis pipeline of calcium imaging data sequences. The motion artifacts in two-photon microscopy recordings can be non-rigid, arising from the finite time of raster scanning and non-uniform deformations of the brain medium.New methodWe introduce an algorithm for fast Non-Rigid Motion Correction (NoRMCorre) based on template matching. NoRMCorre operates by splitting the field of view into overlapping spatial patches that are registered at a sub-pixel resolution for rigid translation against a continuously updated template. The estimated alignments are subsequently up-sampled to create a smooth motion field for each frame that can efficiently approximate non-rigid motion in a piecewise-rigid manner.Existing methodsExisting approaches either do not scale well in terms of computational performance or are targeted to motion artifacts arising from low speed scanning, whereas modern datasets with large field of view are more prone to non-rigid brain deformation issues.ResultsNoRMCorre can be run in an online mode resulting in comparable to or even faster than real time motion registration on streaming data. We evaluate the performance of the proposed method with simple yet intuitive metrics and compare against other non-rigid registration methods on two-photon calcium imaging datasets. Open source Matlab and Python code is also made available.ConclusionsThe proposed method and code provide valuable support to the community for solving large scale image registration problems in calcium imaging, especially when non-rigid deformations are present in the acquired data.

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