Concurrent Rupture of Two Molecular Bonds in Series: Implications for Dynamic Force Spectroscopy

2017 ◽  
Vol 84 (11) ◽  
Author(s):  
Ji Lin ◽  
Yuan Lin ◽  
Jin Qian

The immobilization of receptor–ligand molecules in dynamic force spectroscopy (DFS) often relies on an extra noncovalent linkage to solid surfaces, resulting in two barrier-crossing diffusion processes in series and concurrent bond dissociations. One outstanding theoretical issue is whether the linkage between the immobilizer and biomolecule is sufficiently strong during repeated force ramping in the measurements and how it might influence the interpretation on receptor–ligand kinetics. Following the classical framework by Kramers, we regard each dissociation process as a flux of probabilistic bond configuration outward over an energy barrier in the coordinated energy landscape, and solve the two coupled boundary value problems in the form of Smoluchowski equation. Strong kinetic and mechanical coupling is observed between the two molecular bonds in series, with the results showing that involving a noncovalent linkage in DFS can obscure the unbinding characteristics of the receptor–ligand bond. Our approach provides a quantitative assessment to the hidden effects of having a fragile molecular anchorage in DFS and allows the corrected interpretation on receptor–ligand dissociation kinetics in the case.

2017 ◽  
Vol 09 (03) ◽  
pp. 1750042 ◽  
Author(s):  
Yuan Feng ◽  
Ji Lin ◽  
Jin Qian

The kinetic response of receptor–ligand bonds to externally imposed force is of essential importance for adhesion-mediated behaviors of cells. Two prevailing experimental approaches, so-called dynamic force spectroscopy and force clamp assay, have been commonly adopted to probe the force dependence of bond dissociation rate at single-molecule level. This study focuses on the outstanding theoretical issue concerning the distinct loading paths and different procedures to extract the kinetic information in the two types of experiments. To address the issue, Monte Carlo simulations have been performed to simulate bond dissociation as a well-to-barrier escape process under dynamically imposed force as well as thermal fluctuations, and the consistency of quantitative interpretations on force-dependent bond lifetimes from the different approaches is examined. Our numerical results show that all the interpretations from different methods collapse into a single master curve of lifetime–force relation for receptor–ligand bonds with slip behavior. However, for bonds with biphasic catch–slip behavior, a procedure based on a Gaussian approximation of rupture force distributions, proposed by Dudko for dynamic force spectroscopy, tends to underestimate bond lifetime for certain force range.


Nature ◽  
10.1038/16219 ◽  
1999 ◽  
Vol 397 (6714) ◽  
pp. 50-53 ◽  
Author(s):  
R. Merkel ◽  
P. Nassoy ◽  
A. Leung ◽  
K. Ritchie ◽  
E. Evans

2007 ◽  
Vol 79 (5) ◽  
pp. 58001 ◽  
Author(s):  
Y Murayama ◽  
H Wada ◽  
M Sano

2011 ◽  
Vol 133 (28) ◽  
pp. 10849-10857 ◽  
Author(s):  
Alberto Gomez-Casado ◽  
Henk H. Dam ◽  
M. Deniz Yilmaz ◽  
Daniel Florea ◽  
Pascal Jonkheijm ◽  
...  

CrystEngComm ◽  
2021 ◽  
Vol 23 (1) ◽  
pp. 11-23
Author(s):  
Hang Zhai ◽  
Wenjun Zhang ◽  
Lijun Wang ◽  
Christine V. Putnis

Organo–mineral interactions have long been the focus in the fields of biomineralization and geomineralization, since such interactions not only modulate the dynamics of crystal nucleation and growth but may also change crystal phases, morphologies, and structures.


2006 ◽  
Vol 100 (7) ◽  
pp. 074315 ◽  
Author(s):  
Osamu Takeuchi ◽  
Takaaki Miyakoshi ◽  
Atsushi Taninaka ◽  
Katsunori Tanaka ◽  
Daichi Cho ◽  
...  

Polymers ◽  
2013 ◽  
Vol 5 (1) ◽  
pp. 269-283 ◽  
Author(s):  
Alberto Gomez-Casado ◽  
Arántzazu Gonzalez-Campo ◽  
Yiheng Zhang ◽  
Xi Zhang ◽  
Pascal Jonkheijm ◽  
...  

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