Multilocus phylogeography of the sea snakeHydrophis curtusreveals historical vicariance and cryptic lineage diversity

2014 ◽  
Vol 43 (5) ◽  
pp. 472-484 ◽  
Author(s):  
Kanishka D. B. Ukuwela ◽  
Anslem de Silva ◽  
Mumpuni ◽  
Bryan G. Fry ◽  
Kate L. Sanders
Keyword(s):  
Cryptic Lineage ◽  
Lineage Diversity

Cryptic lineage diversity in the zoonotic pathogen Angiostrongylus cantonensis

2017 ◽  
Vol 107 ◽  
pp. 404-414 ◽  
Author(s):  
Sirilak Dusitsittipon ◽  
Charles D. Criscione ◽  
Serge Morand ◽  
Chalit Komalamisra ◽  
Urusa Thaenkham
Keyword(s):  
Angiostrongylus Cantonensis ◽  
Zoonotic Pathogen ◽  
Cryptic Lineage ◽  
Lineage Diversity

scholarly journals Cryptic lineage diversity, body size divergence, and sympatry in a species complex of Australian lizards (Gehyra)

Evolution ◽  
2017 ◽  
Vol 72 (1) ◽  
pp. 54-66 ◽  
Author(s):  
Craig C. Moritz ◽  
Renae C. Pratt ◽  
Sarah Bank ◽  
Gayleen Bourke ◽  
Jason G. Bragg ◽  
...  
Keyword(s):  
Body Size ◽  
Species Complex ◽  
Cryptic Lineage ◽  
Lineage Diversity

scholarly journals Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK

Science ◽  
2021 ◽  
pp. eabf2946
Author(s):  
Louis du Plessis ◽  
John T. McCrone ◽  
Alexander E. Zarebski ◽  
Verity Hill ◽  
Christopher Ruis ◽  
...  
Keyword(s):  
Large Scale ◽  
Phylogenetic Analyses ◽  
Transmission Dynamics ◽  
Genetic Lineage ◽  
Size Dependent ◽  
Spatio Temporal ◽  
The Uk ◽  
Lineage Structure ◽  
And Control ◽  
Lineage Diversity

The UK’s COVID-19 epidemic during early 2020 was one of world’s largest and unusually well represented by virus genomic sampling. Here we reveal the fine-scale genetic lineage structure of this epidemic through analysis of 50,887 SARS-CoV-2 genomes, including 26,181 from the UK sampled throughout the country’s first wave of infection. Using large-scale phylogenetic analyses, combined with epidemiological and travel data, we quantify the size, spatio-temporal origins and persistence of genetically-distinct UK transmission lineages. Rapid fluctuations in virus importation rates resulted in >1000 lineages; those introduced prior to national lockdown tended to be larger and more dispersed. Lineage importation and regional lineage diversity declined after lockdown, while lineage elimination was size-dependent. We discuss the implications of our genetic perspective on transmission dynamics for COVID-19 epidemiology and control.

Emergence of salivary gland cell lineage diversity suggests a role for androgen-independent epidermal growth factor receptor signaling

1995 ◽  
Vol 108 (6) ◽  
pp. 2205-2212
Author(s):  
E.M. Durban ◽  
P.G. Nagpala ◽  
P.D. Barreto ◽  
E. Durban
Keyword(s):  
Salivary Gland ◽  
Growth Factor ◽  
Epidermal Growth Factor ◽  
Egf Receptor ◽  
Cell Lineage ◽  
Mrna Levels ◽  
Receptor Signaling ◽  
Receptor Mrna ◽  
Epidermal Growth ◽  
Lineage Diversity

Diversity of cell lineages within glandular organs is generated postnatally by differentiation of committed progenitor cells. Fundamental regulatory aspects of this process are not understood. The mouse submandibular salivary gland (SSG) served as model to assess the role of epidermal growth factor (EGF) receptor signaling during emergence of cell lineage diversity. Temporal fluctuations in EGF receptor mRNA levels coincident with crucial differentiative cell lineage transitions were revealed by RNase protection analyses. Between days 2 and 5, when proacinar cells are maturing and striated duct cells emerge, EGF receptor mRNA levels were highest and all differentiating cells exhibited EGF receptor immunoreactivity. EGF receptor mRNA levels then declined sharply and immunoreactivity became confined to ductal cells. At day 11 in male mice, and days 11 and 16 in females, a second increase in EGF receptor mRNA was detected coincident with emergence of granular convoluted tubule (GCT) cells. With completion of androgen-dependent GCT cell differentiation at the onset of puberty, EGF receptor mRNA levels and intensity of immunoreactivity decreased. Androgen effects on EGF receptor mRNA or immunoreactivity could not be detected. These temporally distinct patterns of EGF receptor expression suggest that this signaling pathway is a mechanism of potential importance in emergence of cell lineage diversity in a glandular organ.

scholarly journals Southeast Asia as One of World’s Primary Sources of Biotic Recolonization Following Anthropocene Extinctions

2021 ◽  
Vol 9 ◽  
Author(s):  
Şerban Procheş ◽  
Syd Ramdhani ◽  
Alice C. Hughes ◽  
Lian Pin Koh
Keyword(s):  
Distribution Patterns ◽  
Climatic Conditions ◽  
Habitat Destruction ◽  
Conservation Priorities ◽  
High Survival ◽  
The North ◽  
Starting Point ◽  
Ancient Lineage ◽  
The Face ◽  
Lineage Diversity

The plight of Southeast Asia’s animals, plants and ecosystems in the face of unsustainable exploitation and habitat destruction has been illustrated in several recent studies, despite often falling outside the global discourse on global conservation priorities. Here, we collate biogeographic and phylogenetic information to argue that this beleaguered region is one of world’s primary macrorefugia, and possibly its best chance of regaining its natural biodiversity distribution patterns after the current Anthropocene upheaval. The region uniquely combines top diversity values in (a) ancient lineage diversity and (b) cosmopolitan lineage diversity, suggesting that it has acted in the past as a biodiversity museum and source of global colonization. This is at least partly due to the interplay between latitudinal diversity gradients and continental connectivity patterns. However, the peak values in South China/North Indochina for cosmopolitan tetrapods and their sister lineages suggest that a key feature is also the availability of diverse climatic conditions. In particular, the north-south orientation of the mountain ranges here has allowed for rapid recolonization within the region following past climatic changes, resulting in high survival values and overall exceptional relict lineage diversity. From this starting point, global colonization occurred on multiple occasions. It is hoped that, with urgent action, the region can once again fulfill this function.

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