scholarly journals Genome‐wide characterization of differential transcript usage in Arabidopsis thaliana

2017 ◽  
Vol 92 (6) ◽  
pp. 1218-1231 ◽  
Author(s):  
Dries Vaneechoutte ◽  
April R. Estrada ◽  
Ying‐Chen Lin ◽  
Ann E. Loraine ◽  
Klaas Vandepoele
Keyword(s):  
Arabidopsis Thaliana ◽  
Genome Wide

scholarly journals Genome-wide characterization of intergenic polyadenylation sites redefines gene spaces in Arabidopsis thaliana

BMC Genomics ◽  
2015 ◽  
Vol 16 (1) ◽  
Author(s):  
Xiaohui Wu ◽  
Yong Zeng ◽  
Jinting Guan ◽  
Guoli Ji ◽  
Rongting Huang ◽  
...  
Keyword(s):  
Arabidopsis Thaliana ◽  
Genome Wide ◽  
Polyadenylation Sites

scholarly journals Molecular variation in a functionally divergent homolog of FCA regulates flowering time in Arabidopsis thaliana

2020 ◽  
Vol 11 (1) ◽  
Author(s):  
Yunhe Wang ◽  
Zhen Tao ◽  
Wanyi Wang ◽  
Daniele Filiault ◽  
Chunhong Qiu ◽  
...  
Keyword(s):  
Arabidopsis Thaliana ◽  
Flowering Time ◽  
Natural Variation ◽  
Functional Characterization ◽  
Molecular Variation ◽  
Protein Variant ◽  
Genome Wide ◽  
Natural Variants ◽  
Close Homolog

AbstractThe identification and functional characterization of natural variants in plants are essential for understanding phenotypic adaptation. Here we identify a molecular variation in At2g47310 that contributes to the natural variation in flowering time in Arabidopsis thaliana accessions. This gene, which we term SISTER of FCA (SSF), functions in an antagonistic manner to its close homolog FCA. Genome-wide association analysis screens two major haplotypes of SSF associated with the natural variation in FLC expression, and a single polymorphism, SSF-N414D, is identified as a main contributor. The SSF414N protein variant interacts more strongly with CUL1, a component of the E3 ubiquitination complex, than the SSF414D form, mediating differences in SSF protein degradation and FLC expression. FCA and SSF appear to have arisen through gene duplication after dicot-monocot divergence, with the SSF-N414D polymorphism emerging relatively recently within A. thaliana. This work provides a good example for deciphering the functional importance of natural polymorphisms in different organisms.

scholarly journals Genome-Wide Characterization of ISR Induced in Arabidopsis thaliana by Trichoderma hamatum T382 Against Botrytis cinerea Infection

2012 ◽  
Vol 3 ◽  
Author(s):  
Janick Mathys ◽  
Kaat De Cremer ◽  
Pieter Timmermans ◽  
Stefan Van Kerckhove ◽  
Bart Lievens ◽  
...  
Keyword(s):  
Arabidopsis Thaliana ◽  
Botrytis Cinerea ◽  
Trichoderma Hamatum ◽  
Genome Wide
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