scholarly journals Advancing assessment of marine phytoplankton community structure and nutritional value from fatty acid profiles of cultured microalgae

2018 ◽  
Vol 11 (3) ◽  
pp. 527-549 ◽  
Author(s):  
José P. Cañavate
Keyword(s):  
Community Structure ◽  
Fatty Acid ◽  
Nutritional Value ◽  
Phytoplankton Community ◽  
Marine Phytoplankton ◽  
Phytoplankton Community Structure ◽  
Fatty Acid Profiles

scholarly journals Development of a cost-effective metabarcoding strategy for analysis of the marine phytoplankton community

PeerJ ◽  
2016 ◽  
Vol 4 ◽  
pp. e2115 ◽  
Author(s):  
Tae-Ho Yoon ◽  
Hye-Eun Kang ◽  
Chang-Keun Kang ◽  
Sang Heon Lee ◽  
Do-Hwan Ahn ◽  
...  
Keyword(s):  
Community Structure ◽  
Phytoplankton Community ◽  
Algal Species ◽  
Japan Sea ◽  
Cost Effective ◽  
Marine Ecology ◽  
Marine Phytoplankton ◽  
Phytoplankton Community Structure ◽  
Universal Primer ◽  
Novel Strategy

We developed a cost-effective metabarcoding strategy to analyze phytoplankton community structure using the Illumina MiSeq system. The amplicons (404--411 bp) obtained by end-pairing of two reads were sufficiently long to distinguish algal species and provided barcode data equivalent to those generated with the Roche 454 system, but at less than 1/20th of the cost. The original universal primer sequences targeting the 23S rDNA region and the PCR strategy were both modified, and this resulted in higher numbers of eukaryotic algal sequences by excluding non-photosynthetic proteobacterial sequences supporting effectiveness of this strategy. The novel strategy was used to analyze the phytoplankton community structure of six water samples from the East/Japan Sea: surface and 50 m depths at coastal and open-sea sites, with collections in May and July 2014. In total, 345 operational taxonomic units (OTUs) were identified, which covered most of the prokaryotic and eukaryotic algal phyla, including Dinophyta, Rhodophyta, Ochrophyta, Chlorophyta, Streptophyta, Cryptophyta, Haptophyta, and Cyanophyta. This highlights the importance of plastid 23S primers, which perform better than the currently used 16S primers for phytoplankton community surveys. The findings also revealed that more efforts should be made to update 23S rDNA sequences as well as those of 16S in the databases. Analysis of algal proportions in the six samples showed that community structure differed depending on location, depth and season. Across the six samples evaluated, the numbers of OTUs in each phylum were similar but their relative proportions varied. This novel strategy would allow laboratories to analyze large numbers of samples at reasonable expense, whereas this has not been possible to date due to cost and time. In addition, we expect that this strategy will generate a large amount of novel data that could potentially change established methods and tools that are currently used in the realms of oceanography and marine ecology.

Seasonal changes in phytoplankton community structure in a bioluminescent lagoon, St. Croix, US Virgin Islands

2018 ◽  
Vol 81 (2) ◽  
pp. 109-124 ◽  
Author(s):  
JL Pinckney ◽  
C Tomas ◽  
DI Greenfield ◽  
K Reale-Munroe ◽  
B Castillo ◽  
...  
Keyword(s):  
Community Structure ◽  
Seasonal Changes ◽  
Phytoplankton Community ◽  
Virgin Islands ◽  
Phytoplankton Community Structure ◽  
Us Virgin Islands

scholarly journals Response of ocean phytoplankton community structure to climate change over the 21st century: partitioning the effects of nutrients, temperature and light

2010 ◽  
Vol 7 (12) ◽  
pp. 3941-3959 ◽  
Author(s):  
I. Marinov ◽  
S. C. Doney ◽  
I. D. Lima
Keyword(s):  
Climate Change ◽  
Community Structure ◽  
Sea Ice ◽  
Phytoplankton Biomass ◽  
Phytoplankton Community ◽  
Vertical Mixing ◽  
Phytoplankton Community Structure ◽  
Marginal Sea ◽  
Small Phytoplankton ◽  
The Impact

Abstract. The response of ocean phytoplankton community structure to climate change depends, among other factors, upon species competition for nutrients and light, as well as the increase in surface ocean temperature. We propose an analytical framework linking changes in nutrients, temperature and light with changes in phytoplankton growth rates, and we assess our theoretical considerations against model projections (1980–2100) from a global Earth System model. Our proposed "critical nutrient hypothesis" stipulates the existence of a critical nutrient threshold below (above) which a nutrient change will affect small phytoplankton biomass more (less) than diatom biomass, i.e. the phytoplankton with lower half-saturation coefficient K are influenced more strongly in low nutrient environments. This nutrient threshold broadly corresponds to 45° S and 45° N, poleward of which high vertical mixing and inefficient biology maintain higher surface nutrient concentrations and equatorward of which reduced vertical mixing and more efficient biology maintain lower surface nutrients. In the 45° S–45° N low nutrient region, decreases in limiting nutrients – associated with increased stratification under climate change – are predicted analytically to decrease more strongly the specific growth of small phytoplankton than the growth of diatoms. In high latitudes, the impact of nutrient decrease on phytoplankton biomass is more significant for diatoms than small phytoplankton, and contributes to diatom declines in the northern marginal sea ice and subpolar biomes. In the context of our model, climate driven increases in surface temperature and changes in light are predicted to have a stronger impact on small phytoplankton than on diatom biomass in all ocean domains. Our analytical predictions explain reasonably well the shifts in community structure under a modeled climate-warming scenario. Climate driven changes in nutrients, temperature and light have regionally varying and sometimes counterbalancing impacts on phytoplankton biomass and structure, with nutrients and temperature dominant in the 45° S–45° N band and light-temperature effects dominant in the marginal sea-ice and subpolar regions. As predicted, decreases in nutrients inside the 45° S–45° N "critical nutrient" band result in diatom biomass decreasing more than small phytoplankton biomass. Further stratification from global warming could result in geographical shifts in the "critical nutrient" threshold and additional changes in ecology.

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