Density enhancement of a faba bean genetic linkage map ( Vicia faba ) based on simple sequence repeats markers

2019 ◽  
Vol 138 (2) ◽  
pp. 207-215 ◽  
Author(s):  
Tao Yang ◽  
Junye Jiang ◽  
Hongyan Zhang ◽  
Rong Liu ◽  
Stephen Strelkov ◽  
...  
Keyword(s):  
Linkage Map ◽  
Vicia Faba ◽  
Faba Bean ◽  
Simple Sequence Repeats ◽  
Genetic Linkage ◽  
Genetic Linkage Map ◽  
Density Enhancement ◽  
Simple Sequence

Genetic linkage map of Chinese native variety faba bean (Vicia fabaL.) based on simple sequence repeat markers

2013 ◽  
Vol 132 (4) ◽  
pp. 397-400 ◽  
Author(s):  
Yu Ma ◽  
Shi-ying Bao ◽  
Tao Yang ◽  
Jin-guo Hu ◽  
Jian-ping Guan ◽  
...  
Keyword(s):  
Linkage Map ◽  
Faba Bean ◽  
Simple Sequence Repeat ◽  
Genetic Linkage ◽  
Genetic Linkage Map ◽  
Sequence Repeat ◽  
Simple Sequence Repeat Markers ◽  
Simple Sequence

scholarly journals VfODB: a comprehensive database of ESTs, EST-SSRs, mtSSRs, microRNA-target markers and genetic maps in Vicia faba

AoB Plants ◽  
2020 ◽  
Vol 12 (6) ◽  
Author(s):  
Morad M Mokhtar ◽  
Ebtissam H A Hussein ◽  
Salah El-Din S El-Assal ◽  
Mohamed A M Atia
Keyword(s):  
Vicia Faba ◽  
Faba Bean ◽  
Expressed Sequence Tags ◽  
Genetic Linkage ◽  
Genetic Maps ◽  
Linkage Maps ◽  
Microrna Target ◽  
Genetic Linkage Maps ◽  
Expressed Sequence ◽  
Simple Sequence

Abstract Faba bean (Vicia faba) is an essential food and fodder legume crop worldwide due to its high content of proteins and fibres. Molecular markers tools represent an invaluable tool for faba bean breeders towards rapid crop improvement. Although there have historically been few V. faba genome resources available, several transcriptomes and mitochondrial genome sequence data have been released. These data in addition to previously developed genetic linkage maps represent a great resource for developing functional markers and maps that can accelerate the faba bean breeding programmes. Here, we present the Vicia faba Omics database (VfODB) as a comprehensive database integrating germplasm information, expressed sequence tags (ESTs), expressed sequence tags-simple sequence repeats (EST-SSRs), and mitochondrial-simple sequence repeats (mtSSRs), microRNA-target markers and genetic maps in faba bean. In addition, KEGG pathway-based markers and functional maps are integrated as a novel class of annotation-based markers/maps. Collectively, we developed 31 536 EST markers, 9071 EST-SSR markers and 3023 microRNA-target markers based on V. faba RefTrans V2 mining. By mapping 7940 EST and 2282 EST-SSR markers against the KEGG pathways database we successfully developed 107 functional maps. Also, 40 mtSSR markers were developed based on mitochondrial genome mining. On the data curation level, we retrieved 3461 markers representing 12 types of markers (CAPS, EST, EST-SSR, Gene marker, INDEL, Isozyme, ISSR, RAPD, SCAR, RGA, SNP and SSR), which mapped across 18 V. faba genetic linkage maps. VfODB provides two user-friendly tools to identify, classify SSR motifs and in silico amplify their targets. VfODB can serve as a powerful database and helpful platform for faba bean research community as well as breeders interested in Genomics-Assisted Breeding.

First simple sequence repeat-based genetic linkage map reveals a major QTL for leafing time in walnut (Juglans regia L.)

2019 ◽  
Vol 15 (1) ◽  
Author(s):  
Sina Kefayati ◽  
Adi Surya Ikhsan ◽  
Mehmet Sutyemez ◽  
Aibibula Paizila ◽  
Hayat Topçu ◽  
...  
Keyword(s):  
Linkage Map ◽  
Simple Sequence Repeat ◽  
Genetic Linkage ◽  
Genetic Linkage Map ◽  
Juglans Regia ◽  
Sequence Repeat ◽  
Simple Sequence ◽  
Major Qtl

Genetic Linkage Map of Cassava (Manihot esculentaCrantz) Based on Rubber Tree and Cassava Simple Sequence Repeat Markers

2016 ◽  
Vol 30 (5) ◽  
pp. 552-561
Author(s):  
Supajit Sraphet ◽  
Thummanoon Ponsit ◽  
Nawarat Suksee ◽  
Duncan R Smith ◽  
Kanokporn Triwitayakorn ◽  
...  
Keyword(s):  
Linkage Map ◽  
Simple Sequence Repeat ◽  
Genetic Linkage ◽  
Genetic Linkage Map ◽  
Rubber Tree ◽  
Sequence Repeat ◽  
Simple Sequence Repeat Markers ◽  
Simple Sequence
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