scholarly journals EFFECTOR OF TRANSCRIPTION factors are novel plant-specific regulators associated with genomic DNA methylation in Arabidopsis

2018 ◽  
Vol 221 (1) ◽  
pp. 261-278 ◽  
Author(s):  
Francesca Tedeschi ◽  
Paride Rizzo ◽  
Bui Thi Mai Huong ◽  
Andreas Czihal ◽  
Twan Rutten ◽  
...  
Keyword(s):  
Dna Methylation ◽  
Transcription Factors ◽  
Genomic Dna

Effect of low temperature on genomic DNA methylation in Nile tilapia (Oreochromis niloticus)

2013 ◽  
Vol 37 (10) ◽  
pp. 1460 ◽  
Author(s):  
Huaping ZHU ◽  
Maixin LU ◽  
Zhanghan HUANG ◽  
Fengying GAO ◽  
Xiaoli KE ◽  
...  
Keyword(s):  
Dna Methylation ◽  
Low Temperature ◽  
Oreochromis Niloticus ◽  
Genomic Dna ◽  
Nile Tilapia ◽  
Nile Tilapia Oreochromis Niloticus

scholarly journals Effects of Particulate Matter on Genomic DNA Methylation Content and iNOS Promoter Methylation

2009 ◽  
Vol 117 (2) ◽  
pp. 217-222 ◽  
Author(s):  
Letizia Tarantini ◽  
Matteo Bonzini ◽  
Pietro Apostoli ◽  
Valeria Pegoraro ◽  
Valentina Bollati ◽  
...  
Keyword(s):  
Dna Methylation ◽  
Particulate Matter ◽  
Promoter Methylation ◽  
Genomic Dna ◽  
Inos Promoter

scholarly journals Increased DNA Methylation and Reduced Expression of Transcription Factors in Human Osteoarthritis Cartilage

2016 ◽  
Vol 68 (8) ◽  
pp. 1876-1886 ◽  
Author(s):  
Oscar Alvarez-Garcia ◽  
Kathleen M. Fisch ◽  
Nathan E. Wineinger ◽  
Ryuichiro Akagi ◽  
Masahiko Saito ◽  
...  
Keyword(s):  
Dna Methylation ◽  
Transcription Factors ◽  
Osteoarthritis Cartilage

scholarly journals Epigenetic Basis of Regeneration: Analysis of Genomic DNA Methylation Profiles in the MRL/MpJ Mouse

DNA Research ◽  
2013 ◽  
Vol 20 (6) ◽  
pp. 605-621 ◽  
Author(s):  
B. Gornikiewicz ◽  
A. Ronowicz ◽  
J. Podolak ◽  
P. Madanecki ◽  
A. Stanislawska-Sachadyn ◽  
...  
Keyword(s):  
Dna Methylation ◽  
Genomic Dna

scholarly journals Global impacts of chromosomal imbalance on gene expression in Arabidopsis and other taxa

2018 ◽  
Vol 115 (48) ◽  
pp. E11321-E11330 ◽  
Author(s):  
Jie Hou ◽  
Xiaowen Shi ◽  
Chen Chen ◽  
Md. Soliman Islam ◽  
Adam F. Johnson ◽  
...  
Keyword(s):  
Gene Expression ◽  
Dna Methylation ◽  
Transcription Factors ◽  
Leaf Tissue ◽  
Global Gene Expression ◽  
Published Data ◽  
Chromosomal Imbalance ◽  
Regulatory Processes ◽  
Expression Of Genes ◽  
Global Impacts

Changes in dosage of part of the genome (aneuploidy) have long been known to produce much more severe phenotypic consequences than changes in the number of whole genomes (ploidy). To examine the basis of these differences, global gene expression in mature leaf tissue for all five trisomies and in diploids, triploids, and tetraploids of Arabidopsis thaliana was studied. The trisomies displayed a greater spread of expression modulation than the ploidy series. In general, expression of genes on the varied chromosome ranged from compensation to dosage effect, whereas genes from the remainder of the genome ranged from no effect to reduced expression approaching the inverse level of chromosomal imbalance (2/3). Genome-wide DNA methylation was examined in each genotype and found to shift most prominently with trisomy 4 but otherwise exhibited little change, indicating that genetic imbalance is generally mechanistically unrelated to DNA methylation. Independent analysis of gene functional classes demonstrated that ribosomal, proteasomal, and gene body methylated genes were less modulated compared with all classes of genes, whereas transcription factors, signal transduction components, and organelle-targeted protein genes were more tightly inversely affected. Comparing transcription factors and their targets in the trisomies and in expression networks revealed considerable discordance, illustrating that altered regulatory stoichiometry is a major contributor to genetic imbalance. Reanalysis of published data on gene expression in disomic yeast and trisomic mouse cells detected similar stoichiometric effects across broad phylogenetic taxa, and indicated that these effects reflect normal gene regulatory processes.

scholarly journals Physical activity and global genomic DNA methylation in a cancer-free population

Epigenetics ◽  
2011 ◽  
Vol 6 (3) ◽  
pp. 293-299 ◽  
Author(s):  
Fang Fang Zhang ◽  
Roberto Cardarelli ◽  
Joan Carroll ◽  
Shun Zhang ◽  
Kimberly G. Fulda ◽  
...  
Keyword(s):  
Physical Activity ◽  
Dna Methylation ◽  
Genomic Dna

scholarly journals Folate depletion during pregnancy and lactation reduces genomic DNA methylation in murine adult offspring

2010 ◽  
Vol 6 (2) ◽  
pp. 189-196 ◽  
Author(s):  
Jill A. McKay ◽  
Kevin J. Waltham ◽  
Elizabeth A. Williams ◽  
John C. Mathers
Keyword(s):  
Dna Methylation ◽  
Genomic Dna ◽  
Adult Offspring ◽  
Pregnancy And Lactation ◽  
Folate Depletion

scholarly journals DNA methylation-mediated transcription factors regulate Piwil1 expression during chicken spermatogenesis

2016 ◽  
Vol 62 (4) ◽  
pp. 367-372 ◽  
Author(s):  
Lingling QIU ◽  
Lu XU ◽  
Guobin CHANG ◽  
Qixin GUO ◽  
Xiangping LIU ◽  
...  
Keyword(s):  
Dna Methylation ◽  
Transcription Factors

Competitive regulation by transcription factors and DNA methylation in the bovine SIRT5 promoter: Roles of E2F4 and KLF6

Gene ◽  
2019 ◽  
Vol 684 ◽  
pp. 39-46 ◽  
Author(s):  
Jieyun Hong ◽  
Xiaoyu Wang ◽  
Chugang Mei ◽  
Linsen Zan
Keyword(s):  
Dna Methylation ◽  
Transcription Factors
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