The soil microbial community predicts the importance of plant traits in plant–soil feedback

2014 ◽  
Vol 206 (1) ◽  
pp. 329-341 ◽  
Author(s):  
Po‐Ju Ke ◽  
Takeshi Miki ◽  
Tzung‐Su Ding
Keyword(s):  
Microbial Community ◽  
Soil Microbial Community ◽  
Plant Traits ◽  
Soil Microbial ◽  
Plant Soil ◽  
Soil Feedback

scholarly journals Apple Root stocks and Pre-plant Soil Treatments Alter Soil Microbial Community Composition in a New York Orchard

HortScience ◽  
2005 ◽  
Vol 40 (4) ◽  
pp. 1128C-1128
Author(s):  
Shengrui Yao ◽  
Ian A. Merwin ◽  
Janice E. Thies
Keyword(s):  
Microbial Community ◽  
Microbial Communities ◽  
Community Composition ◽  
Soil Microbial Community ◽  
Microbial Community Composition ◽  
Soil Microbial Communities ◽  
Growth And Yield ◽  
Soil Microbial ◽  
Plant Soil ◽  
Soil Microbial Community Composition

Apple (Malu ×domestica) replant disease (ARD) is a soil-borne disease syndrome of complex etiology that occurs worldwide when establishing new orchards in old fruit-growing sites. Methyl bromide (MB) has been an effective soil fumigant to control ARD, but safer alternatives to MB are needed. We evaluated soil microbial communities, tree growth, and fruit yield for three pre-plant soil treatments (compost amendment, soil treatment with a broad-spectrum fumigant, and untreated controls), and five clonal rootstocks (M7, M26, CG6210, CG30, and G16), in an apple replant site at Ithaca, N.Y. Molecular fingerprinting (PCR-DGGE) techniques were used to study soil microbial community composition of root-zone soil of the different soil treatments and rootstocks. Tree caliper, shoot growth, and yield were measured annually from 2002–04. Among the five rootstocks we compared, trees on CG6210 had the most growth and yield, while trees on M26 had the least growth and yield. Soil treatments altered soil microbial communities during the year after pre-plant treatments, and each treatment was associated with distinct microbial groups in hierarchical cluster analyses. However, those differences among fungal and bacterial communities diminished during the second year after planting, and soil fungal communities equilibrated faster than bacterial communities. Pre-plant soil treatments altered bulk-soil microbial community composition, but those shifts in soil microbial communities had no obvious correlation with tree performance. Rootstock genotypes were the dominant factor in tree performance after 3 years of observations, and different rootstocks were associated with characteristic bacterial, pseudomonad, fungal, and oomycetes communities in root-zone soil.

scholarly journals Adaptation to chronic drought modifies soil microbial community responses to phytohormones

2021 ◽  
Vol 4 (1) ◽  
Author(s):  
Emma J. Sayer ◽  
John A. Crawford ◽  
James Edgerley ◽  
Andrew P. Askew ◽  
Christoph Z. Hahn ◽  
...  
Keyword(s):  
Microbial Community ◽  
Soil Respiration ◽  
Microbial Communities ◽  
Soil Microbial Community ◽  
Plant Stress ◽  
Soil Microbial Communities ◽  
Community Responses ◽  
Soil Microbial ◽  
Plant Soil

AbstractDrought imposes stress on plants and associated soil microbes, inducing coordinated adaptive responses, which can involve plant–soil signalling via phytohormones. However, we know little about how microbial communities respond to phytohormones, or how these responses are shaped by chronic (long-term) drought. Here, we added three phytohormones (abscisic acid, 1-aminocyclopropane-1-carboxylic acid, and jasmonic acid) to soils from long-term (25-year), field-based climate treatments to test the hypothesis that chronic drought alters soil microbial community responses to plant stress signalling. Phytohormone addition increased soil respiration, but this effect was stronger in irrigated than in droughted soils and increased soil respiration at low phytohormone concentrations could not be explained by their use as substrate. Thus, we show that drought adaptation within soil microbial communities modifies their responses to phytohormone inputs. Furthermore, distinct phytohormone-induced shifts in microbial functional groups in droughted vs. irrigated soils might suggest that drought-adapted soil microorganisms perceive phytohormones as stress-signals, allowing them to anticipate impending drought.

scholarly journals α-Terpineol fumigation alleviates negative plant-soil feedbacks of Panax notoginseng via suppressing Ascomycota and enriching antagonistic bacteria

2021 ◽  
Vol 3 (1) ◽  
Author(s):  
Chen Ye ◽  
Yixiang Liu ◽  
Junxing Zhang ◽  
Tianyao Li ◽  
Yijie Zhang ◽  
...  
Keyword(s):  
Microbial Community ◽  
Relative Abundance ◽  
Soil Microbial Community ◽  
Fungal Pathogens ◽  
High Throughput Sequencing ◽  
Panax Notoginseng ◽  
Dependent Manner ◽  
Beneficial Bacteria ◽  
Soil Microbial ◽  
Plant Soil

AbstractThe accumulation of soil-borne pathogens is the main driving factor of negative plant-soil feedbacks (NPSFs), which seriously restricts the sustainable development of agriculture. Using natural volatile organic compounds (VOCs) from plants or microorganisms as biofumigants is an emerging strategy to alleviate NPSFs in an environmentally-friendly way. Here, we identified α-terpineol from the VOCs of pine needles, confirmed the ability of α-terpineol fumigation in alleviating the NPSF of Panax notoginseng via significantly reducing seed decay rate, and also deciphered the underlying mechanism by which the soil microbial community is modified. α-Terpineol fumigation could suppress culturable fungi but enrich bacteria in a dose-dependent manner. Network analysis with high-throughput sequencing data revealed that α-terpineol could distinctly modify both fungal and bacterial communities. In detail, α-terpineol significantly suppressed the relative abundance of Ascomycota from 64.04 to 32.26%, but enriched the relative abundance of Proteobacteria, Acidobacteria and Actinobacteria. Subnetwork analysis further demonstrated that α-terpineol could directly or indirectly suppress fungal pathogens and enrich plant growth-promoting rhizobacteria (PGPRs). In vitro fumigation and co-culture experiments with culturable isolates validated these findings. The antagonism between beneficial bacteria and pathogens, and the synergistic growth promotion among α-terpineol-enriched bacteria might be involved in soil microbial community assembly. In summary, α-terpineol fumigation could directly or indirectly modify the soil microbial community to alleviate NPSFs, especially by suppressing fungal pathogens and enriching beneficial bacteria. This study suggests that VOCs from natural products are worth developing as biofumigants due to their multiple functions in modifying the soil microbial community.

Soil microbial community response to nitrogen and phosphorous fertilization in a temperate forest nursery

2018 ◽  
Vol 51 (2) ◽  
Author(s):  
Muhammad Razaq ◽  
Muhammad Sajjad Haider ◽  
Salah Uddin ◽  
Liu Chunping ◽  
Hai-Long Shen ◽  
...  
Keyword(s):  
Microbial Community ◽  
Soil Microbial Community ◽  
Temperate Forest ◽  
Community Response ◽  
Forest Nursery ◽  
Soil Microbial
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