Molecular phylogenetics ofHymenocraterand allies (Lamiaceae): new insights from nrITS, plastidtrnLintron andtrnL-Fintergenic spacer DNA sequences

2017 ◽  
Vol 36 (1_2) ◽  
pp. njb-01600
Author(s):  
Fariba Serpooshan ◽  
Ziba Jamzad ◽  
Taher Nejadsattari ◽  
Iraj Mehregan
Keyword(s):  
Dna Sequences ◽  
Molecular Phylogenetics ◽  
Spacer Dna

scholarly journals First Report of Musk Thistle Rust (Puccinia carduorum) in California and Nevada

Plant Disease ◽  
2002 ◽  
Vol 86 (7) ◽  
pp. 814-814 ◽  
Author(s):  
D. M. Woods ◽  
M. J. Pitcairn ◽  
D. G. Luster ◽  
W. L. Bruckart
Keyword(s):  
Ribosomal Rna ◽  
Dna Sequences ◽  
Internal Transcribed Spacer ◽  
East Coast ◽  
Rust Fungus ◽  
The United States ◽  
Rust Disease ◽  
Carduus Nutans ◽  
Its1 And Its2 ◽  
Spacer Dna

Musk thistle, Carduus nutans L., is an introduced weed of pastures, rangelands, and natural areas in much of North America. Puccinia carduorum Jacky, an autoecious rust fungus from Turkey, has been evaluated for biological control of musk thistle since 1978, including a field study near Blacksburg, VA, from 1987 to 1990. After release of the fungus in Virginia, rusted musk thistle was found in eight eastern states by 1992, in Missouri by 1994 (1), and in Oklahoma by 1997 (2). A rust disease was discovered on musk thistle near Mt. Shasta, CA, on 22 September 1998, and near Mogul, NV, on 12 August 1999. The pathogen was identified as P. carduorum on the basis of pathogenicity on musk thistle and urediniospore morphology (ovate spores, 21 μm diameter, three germ pores equatorial in location, and echinulations over the upper two-thirds to three-quarters of urediniospores). Ribosomal RNA internal transcribed spacer DNA sequences (ITS1 and ITS2) were identical to those from the isolate obtained after the field release in Virginia, verifying that the California isolate is P. carduorum. The initial California infestation was observed on a few plants late in the season, and by September 2000, nearly 100% of plants were infected. The occurrence of P. carduorum in California is apparently the result of natural, unaided spread of the fungus on musk thistle from the East Coast of the United States. References: (1) A. B. A. M. Baudoin and W. L. Bruckart. Plant Dis. 80:1193, 1996. (2) L. J. Littlefield et al. Plant Dis. 82:832, 1998.

Molecular phylogenetics and molecular clock dating of Sapindales based on plastid rbcL, atpB and trnL-trnF DNA sequences

Taxon ◽  
2016 ◽  
Vol 65 (5) ◽  
pp. 1019-1036 ◽  
Author(s):  
Alexandra N. Muellner-Riehl ◽  
Andrea Weeks ◽  
Joshua W. Clayton ◽  
Sven Buerki ◽  
Lars Nauheimer ◽  
...  
Keyword(s):  
Molecular Clock ◽  
Dna Sequences ◽  
Molecular Phylogenetics ◽  
Molecular Clock Dating

scholarly journals Comparing Medicinal Uses of Cochlospermaceae throughout Its Geographic Range with Insights from Molecular Phylogenetics

Diversity ◽  
2018 ◽  
Vol 10 (4) ◽  
pp. 123 ◽  
Author(s):  
Susannah Johnson-Fulton ◽  
Linda Watson
Keyword(s):  
Bioactive Compounds ◽  
Dna Sequences ◽  
Related Species ◽  
Molecular Phylogenetics ◽  
Closely Related Species ◽  
Active Compounds ◽  
Medicinal Uses ◽  
Continental Scale ◽  
Chloroplast Markers ◽  
Geographic Regions

Species of the Cochlospermaceae, a small mostly pantropical plant family, were evaluated at a continental scale for medicinal uses in traditional medicine. This ethnobotanical information was placed in a phylogenetic framework to make informed predictions in the search for new medicines and bioactive compounds. Medicinal plant-use data were mapped onto a molecular phylogeny based on DNA sequences of nuclear and chloroplast markers. Associations of medicinal uses among closely related species occurring in different geographic regions and among diverse cultures were evaluated. The most common medicinal uses for these species are those used to treat skin ailments, gastro-intestinal problems, malaria, and liver issues. The plant species with the most numerous uses is Cochlospermum tinctorium, which occurs primarily in West Africa. Closely related species being used by cultural groups in different geographic regions to treat the same illnesses suggests the presence of bioactive compounds with potential biomedical value, since they may represent independent discoveries of similar medicinally-active compounds. This leads to the speculation that those closely related species not currently being used to treat these ailments may also contain identical or similar medicinally-active compounds and are worthy of laboratory investigations.

Molecular phylogenetics of the Australian acacias of subg. Phyllodineae (Fabaceae: Mimosoideae) based on the trnK intron

2003 ◽  
Vol 51 (2) ◽  
pp. 167 ◽  
Author(s):  
Joseph T. Miller ◽  
Rose Andrew ◽  
Randall J. Bayer
Keyword(s):  
Dna Sequences ◽  
Molecular Phylogenetics ◽  
Sequence Divergence ◽  
Large Numbers ◽  
Close Relationship ◽  
Trnk Intron ◽  
Species Groups ◽  
Morphological Species ◽  
Sectional Classification ◽  
Relationship Of

With over 960 species, Acacia is the largest genus of plants in Australia with all but nine of these species classified as subgenus Phyllodineae. DNA sequences for the chloroplast trnK region were sequenced for over 100 species to test sectional classification and survey species relationships within this subgenus. Only one of the seven recognised sections was found to be monophyletic; however, the close relationship of sect. Botrycephalae to certain racemose, uninerved species of sect. Phyllodineae is confirmed. Support is found for an expanded version of Vassal's Pulchelloidea, with the addition of sect. Lycopodiifoliae and several members of sect. Phyllodineae. These species, while morphologically distinct in adult foliage, possess similar seedling characteristics. The multinerved species are unresolved, indicating a rapid morphological radiation with little chloroplast sequence divergence among these species. The low levels of sequence divergence, large numbers of morphological species groups and the adaptive radiation of the group are discussed.

scholarly journals Phylogenetic Analysis of Pines Based on Chloroplast trnT-trnL Intergenic Spacer DNA Sequences

2014 ◽  
Vol 30 (3) ◽  
pp. 307-313
Author(s):  
Yurry Um ◽  
Won-Kyu Park ◽  
Nam-Su Jo ◽  
Sim-Hee Han ◽  
Yi Lee
Keyword(s):  
Phylogenetic Analysis ◽  
Dna Sequences ◽  
Intergenic Spacer ◽  
Spacer Dna

scholarly journals ULASAN Kajian Filogenetika Molekuler dan Peranannya dalam Menyediakan Informasi Dasar untuk Meningkatkan Kualitas Sumber Genetik Anggrek

2016 ◽  
Vol 4 (1) ◽  
pp. 35 ◽  
Author(s):  
Topik Hidayat ◽  
Adi Pancoro
Keyword(s):  
Dna Sequences ◽  
Molecular Phylogenetics ◽  
Phylogenetic Analyses ◽  
Molecular Data ◽  
Biochemical Properties ◽  
Intergeneric Hybrids ◽  
Basic Knowledge ◽  
Phylogenetic Studies ◽  
Molecular Phylogenetic ◽  
Ornamental Crops

<p>Early information<br />resulted from molecular phylogenetic studies of many important<br />ornamental crops is often less attention to many<br />growers and farmers. Phylogenetics is one of the most preferable<br />method in systematics to reconstruct evolutionary<br />relationships of groups of biological organisms in order to<br />understand their biodiversities. This has been revolutionized<br />by DNA sequences data. In this method, a group of organisms<br />that shares many identical characteristics are considered<br />to be closely related; deriving from a common<br />ancestor and is assumed to have similar genetic patterns<br />and biochemical properties. By these basic principles,<br />molecular phylogenetics plays important roles in revealing a<br />basic knowledge on pattern of relationships to which<br />genetic resources can be improved. Over the past decade,<br />botanists have done several thousand phylogenetic analyses<br />based on molecular data of economically and horticulturally<br />important crops. Orchids are the best example for this.<br />There is no doubt that most orchid plants had played roles in<br />horticulture and hybridization. At present, many infrageneric<br />and intergeneric hybrids are available commercially. Successful<br />hybridization can be achieved if two or more individual<br />plants understudy are closely related in respect to their<br />genetics and evolution.</p>

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