Not as widespread as thought: Integrative taxonomy reveals cryptic diversity in the Amazonian nurse frog Allobates tinae Melo‐Sampaio, Oliveira and Prates, 2018 and description of a new species

2020 ◽  
Vol 58 (4) ◽  
pp. 1173-1194
Author(s):  
Albertina Pimentel Lima ◽  
Miquéias Ferrão ◽  
Douglas Lacerda da Silva
Keyword(s):  
New Species ◽  
Integrative Taxonomy ◽  
Cryptic Diversity ◽  
A New Species

scholarly journals Integrative Taxonomy Reveals Hidden Cryptic Diversity within Pin Nematodes of the Genus Paratylenchus (Nematoda: Tylenchulidae)

Plants ◽  
2021 ◽  
Vol 10 (7) ◽  
pp. 1454
Author(s):  
Ilenia Clavero-Camacho ◽  
Juan Emilio Palomares-Rius ◽  
Carolina Cantalapiedra-Navarrete ◽  
Guillermo León-Ropero ◽  
Jorge Martín-Barbarroja ◽  
...  
Keyword(s):  
Molecular Markers ◽  
New Species ◽  
Species Complex ◽  
Integrative Taxonomy ◽  
Southern Spain ◽  
Cryptic Diversity ◽  
Natural Ecosystems ◽  
Morphometric Analyses ◽  
Present Distribution ◽  
A New Species

This study delves into the diagnosis of pin nematodes (Paratylenchus spp.) in Spain based on integrative taxonomical approaches using 24 isolates from diverse natural and cultivated environments. Eighteen species were identified using females, males (when available) and juveniles with detailed morphology-morphometry and molecular markers (D2-D3, ITS and COI). Molecular markers were obtained from the same individuals used for morphological and morphometric analyses. The cryptic diversity using an integrative taxonomical approach of the Paratylenchus straeleni-species complex was studied, consisting of an outstanding example of the cryptic diversity within Paratylenchus and including the description of a new species, Paratylenchus parastraeleni sp. nov. Additionally, 17 already known species were identified comprising P. amundseni, P. aciculus, P. baldaccii, P. enigmaticus, P. goodeyi, P. holdemani, P. macrodorus, P. neoamblycephalus, P. pandatus, P. pedrami, P. recisus, P. sheri, P. tateae, P. variabilis, P. veruculatus, P. verus, and P. vitecus. Eight of these species need to be considered as first reports for Spain in this work (viz. P. amundseni, P. aciculus, P. neoamblycephalus, P. pandatus, P. recisus, P. variabilis, P. verus and P. vitecus). Thirty-nine species of Paratylenchus have been reported in Spain from cultivated and natural ecosystems. Although we are aware that nematological efforts on Paratylenchus species in Southern Spain have been higher than that carried out in central and northern part of the country, the present distribution of the genus in Spain, with about 90% of species (35 out of 39 species, and 24 of them confirmed by integrative taxonomy) only reported in Southern Spain, suggest that this part of the country can be considered as a potential hotspot of biodiversity.

Integrative taxonomy of giant crested Eusirus in the Southern Ocean, including the description of a new species (Crustacea: Amphipoda: Eusiridae)

2020 ◽  
Author(s):  
Marie L Verheye ◽  
Cédric D’Udekem D’Acoz
Keyword(s):  
New Species ◽  
Species Diversity ◽  
Morphological Analysis ◽  
Integrative Taxonomy ◽  
Putative Species ◽  
Species Complexes ◽  
Statistical Parsimony ◽  
Bayesian Implementation ◽  
A New Species ◽  
Giant Species

Abstract Among Antarctic amphipods of the genus Eusirus, a highly distinctive clade of giant species is characterized by a dorsal, blade-shaped tooth on pereionites 5–7 and pleonites 1–3. This lineage, herein named ‘crested Eusirus’, includes two potential species complexes, the Eusirus perdentatus and Eusirus giganteus complexes, in addition to the more distinctive Eusirus propeperdentatus. Molecular phylogenies and statistical parsimony networks (COI, CytB and ITS2) of crested Eusirus are herein reconstructed. This study aims to formally revise species diversity within crested Eusirus by applying several species delimitation methods (Bayesian implementation of the Poisson tree processes model, general mixed Yule coalescent, multi-rate Poisson tree processes and automatic barcode gap discovery) on the resulting phylogenies. In addition, results from the DNA-based methods are benchmarked against a detailed morphological analysis of all available specimens of the E. perdentatus complex. Our results indicate that species diversity of crested Eusirus is underestimated. Overall, DNA-based methods suggest that the E. perdentatus complex is composed of three putative species and that the E. giganteus complex includes four or five putative species. The morphological analysis of available specimens from the E. perdentatus complex corroborates molecular results by identifying two differentiable species, the genuine E. perdentatus and a new species, herein described as Eusirus pontomedon sp. nov.

Cytogenetic Investigations in Bornean Rhinolophoidea Revealed Cryptic Diversity in Rhinolophus sedulus Entailing Classification of Peninsular Malaysia Specimens as a New Species

2021 ◽  
Vol 23 (1) ◽  
Author(s):  
Marianne Volleth ◽  
Faisal A. A. Khan ◽  
Stefan Müller ◽  
Robert J. Baker ◽  
Daniela Arenas-Viveros ◽  
...  
Keyword(s):  
New Species ◽  
Peninsular Malaysia ◽  
Cryptic Diversity ◽  
A New Species

scholarly journals A new Andean treefrog (Amphibia: Hyloscirtus bogotensis group) from Ecuador: an example of community involvement for conservation

PeerJ ◽  
2021 ◽  
Vol 9 ◽  
pp. e11914
Author(s):  
Mario H. Yánez-Muñoz ◽  
Juan Pablo Reyes-Puig ◽  
Diego Batallas-Revelo ◽  
Callie Broaddus ◽  
Miguel Urgilés-Merchán ◽  
...  
Keyword(s):  
New Species ◽  
Community Involvement ◽  
Phylogenetic Position ◽  
Cryptic Diversity ◽  
Dorsal Skin ◽  
Land Trust ◽  
Biogeographic Barrier ◽  
North And South ◽  
A New Species ◽  
Lines Of Evidence

We provide several lines of evidence to delimit a new species of Hyloscirtus and define its phylogenetic position inside the Hyloscirtus bogotensis group. The new species is the sister taxon to Hyloscirtus mashpi and is related to a clade formed by H. alytolylax and a putative new species from the province of El Oro in, southwestern Ecuador. Hyloscirtus conscientia sp. nov. is described from the montane forests of the Mira River basin in the extreme northwestern Ecuador. The new species is characterized as follows: tympanic annulus conspicuous, tip of snout in dorsal view subacuminate, middorsal stripe formed by melanophores larger and less dense, dorsal skin with individual iridophores forming dots, scarcely distributed across dorsum. Our study also highlights the importance of the Mira River Valley as a biogeographic barrier; suggesting research efforts north and south of the valley are likely to reveal additional endemic cryptic diversity. Finally, our partnership with Reserva: The Youth Land Trust, Rainforest Trust and EcoMinga Foundation has produced a novel and meaningful way to connect young people with biodiversity discovery and habitat conservation.

Taxonomic changes and description of two new species for the Phyllodactylus lanei complex (Gekkota: Phyllodactylidae) in Mexico

Zootaxa ◽  
2018 ◽  
Vol 4407 (2) ◽  
pp. 151 ◽  
Author(s):  
TONATIUH RAMÍREZ-REYES ◽  
OSCAR FLORES-VILLELA
Keyword(s):  
New Species ◽  
Molecular Phylogeny ◽  
Genetic Distance ◽  
Morphological Characters ◽  
Integrative Taxonomy ◽  
Cryptic Diversity ◽  
Ecological Data ◽  
Temperature And Precipitation ◽  
Two New Species ◽  
Taxonomic Changes

An integrative taxonomy approach was implemented based on analysis of genetic, phylogenetic, morphological and ecological data to identify the cryptic diversity within the Phyllodactylus lanei complex. At least six species can be identified, of which four are currently considered subspecies: Phyllodactylus lanei, Phyllodactylus rupinus, Phyllodactylus isabelae, Phyllodactylus lupitae and two corresponding to undescribed taxa, which are identified and described in this contribution. These differ from other Mexican geckos in several characters: genetic distance (DNAmt), position in molecular phylogeny (concatened data DNAmt+DNAnu), species tree, morphological characters such as snout-vent length, longitudinal scales, tubercles from head to tail, interorbital scales, scales across venter, third labial–snout scales and rows of tubercles across dorsum; there are also differences in their bioclimatic profiles (temperature and precipitation) and geographical distribution. The most recent studies on taxonomy and evolution of Mexican geckos (Phyllodactylus) show that the diversity of this group of reptiles is currently underestimated, suggesting that more research and conservation efforts are should be addressed at these lizards. 

scholarly journals An integrated approach to delimiting species borders in the genus Chrysotoxum Meigen, 1803 (Diptera: Syrphidae), with description of two new species

2015 ◽  
Vol 84 (4) ◽  
pp. 285-304 ◽  
Author(s):  
Zorica Nedeljković ◽  
Jelena Ačanski ◽  
Mihajla Đan ◽  
Dragana Obreht-Vidaković ◽  
Antonio Ricarte ◽  
...  
Keyword(s):  
New Species ◽  
Integrated Approach ◽  
Integrative Taxonomy ◽  
Species Boundaries ◽  
Integrative Approach ◽  
Taxonomic Study ◽  
Additional Species ◽  
Two New Species ◽  
Lateral Margins ◽  
A New Species

Integrative taxonomy tests the validity of taxa using methods additional to traditional morphology. The existence of two different morphotypes in specimens identified as Chrysotoxum vernale Loew (Diptera: Syrphidae) prompted their taxonomic study using an integrative approach that included morphology, wing and male-surstylus geometric morphometrics, genetic and ecological analyses. As a result, a new species is recognised, Chrysotoxum montanum Nedeljković & Vujić sp. nov., and C. vernale is re-defined. A lectotype and paralectotypes are designated for C. vernale to stabilize this concept. An additional species, Chrysotoxum orthostylum Vujić sp. nov., with distinctive male genitalia is also described. The three species share an antenna with the basoflagellomere shorter than the scape plus pedicel and terga with yellow fasciae not reaching the lateral margins. This study confirms the value of integrative approach for resolving species boundaries.

Integrative taxonomy of the Asian skinks Sphenomorphus stellatus (Boulenger, 1900) and S. praesignis (Boulenger, 1900) with the resurrection of S. annamiticus (Boettger, 1901) and the description of a new species from Cambodia

Zootaxa ◽  
2019 ◽  
Vol 4683 (3) ◽  
pp. 381-411 ◽  
Author(s):  
L. LEE GRISMER ◽  
PERRY L., JR. WOOD ◽  
EVAN S. H. QUAH ◽  
SHAHRUL ANUAR ◽  
NIKOLAY A. POYARKOV ◽  
...  
Keyword(s):  
New Species ◽  
Phylogenetic Analyses ◽  
Molecular Data ◽  
Color Pattern ◽  
Integrative Taxonomy ◽  
Peninsular Malaysia ◽  
Wildlife Sanctuary ◽  
Molecular Phylogenetic ◽  
Univariate Analyses ◽  
A New Species

Molecular phylogenetic analyses of the sister species Sphenomorphus stellatus and S. praesignis based on the mitochondrial genes 12S and 16S rRNA recover the former as paraphyletic with respect to the latter in that a specimen of S. stellatus from the type locality in Peninsular Malaysia is more closely related to S. praesignis than to Indochinese populations of S. stellatus. Furthermore, the phylogeny indicates that the Indochinese populations represent two species, thus resulting in four major lineages within this clade. These relationships are consistent with multivariate and univariate analyses of morphological and discrete color pattern data which statistically define and diagnose the four lineages and together with the molecular data, provide the foundation for robust, testable, species-level hypotheses. As such, S. stellatus is herein restricted to Peninsular Malaysia; S. annamiticus is resurrected for the circum-continental populations ranging through southeastern Thailand, southern Cambodia, and southern Vietnam; a new species—S. preylangensis sp. nov.—is described from an isolated mountain, Phnom Chi, from the Prey Lang Wildlife Sanctuary in central Cambodia; and the taxonomy of S. praesignis remains unchanged. The description of S. preylangensis sp. nov. underscores the necessity to conserve this remnant of lowland evergreen rainforest in the Prey Lang Wildlife Sanctuary. 

Electrogena brulini sp. nov. and E. vipavensis Zurwerra & Tomka, 1986 syn. nov. revealed by integrative taxonomy of E. gridellii (Grandi, 1953) (Ephemeroptera: Heptageniidae)

Zootaxa ◽  
2017 ◽  
Vol 4362 (3) ◽  
pp. 359 ◽  
Author(s):  
ANDRE WAGNER ◽  
LAURENT VUATAZ ◽  
MICHEL SARTORI
Keyword(s):  
New Species ◽  
Genetic Analysis ◽  
Related Species ◽  
Mitochondrial Gene ◽  
Integrative Taxonomy ◽  
Northern Italy ◽  
Closely Related Species ◽  
Colour Patterns ◽  
A New Species ◽  
Subjective Synonym

A new species belonging to the speciose genus Electrogena Zurwerra & Tomka, 1985 is described based on all stages from material collected in Switzerland, northern Italy and Slovenia. Electrogena brulini Wagner sp. nov. is closely related to E. gridellii (Grandi, 1953). A genetic analysis based on the mitochondrial gene CO1, including 9 specimens from 5 populations, reveals a K2P distance of 22% between both species. Our investigations demonstrate that the description of the nymph of E. gridellii sensu Belfiore (1996) refers in fact to both species. Therefore, E. gridellii is redescribed in all stages. The number of bristles on each mandibular prostheca in the nymphs, the shape of titillators in male genitalia and the shape of the subanal plate in female imagines are the main characters allowing discrimination of these two species. This study also shows that in this case it is possible and helpful to use colour patterns to separate two closely related species. The re-examination of the type material of Electrogena vipavensis Zurwerra & Tomka, 1986 described from western Slovenia indicates that this species is a junior subjective synonym of E. gridellii. 

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