Y-chromosome haplotype analysis revealing multiple paternal origins in swamp buffaloes of China and Southeast Asia

2018 ◽  
Vol 135 (6) ◽  
pp. 442-449 ◽  
Author(s):  
Shaoqiang Wang ◽  
Xiaoting Xia ◽  
Tao Zhang ◽  
Ting Sun ◽  
Ruihua Dang ◽  
...  
Keyword(s):  
Southeast Asia ◽  
Y Chromosome ◽  
Haplotype Analysis ◽  
Swamp Buffaloes ◽  
Chromosome Haplotype

scholarly journals Y Chromosome Haplotype Analysis in Portuguese Cattle Breeds Using SNPs and STRs

2008 ◽  
Vol 100 (2) ◽  
pp. 148-157 ◽  
Author(s):  
Catarina Ginja ◽  
Luís Telo da Gama ◽  
Maria Cecilia T. Penedo
Keyword(s):  
Y Chromosome ◽  
Haplotype Analysis ◽  
Cattle Breeds ◽  
Chromosome Haplotype

Y-chromosome haplotype analysis in Antioquia (Colombia)

2005 ◽  
Vol 151 (1) ◽  
pp. 85-91 ◽  
Author(s):  
A.A. Gaviria ◽  
A.A. Ibarra ◽  
O.D. Palacio ◽  
Y.C. Posada ◽  
O. Triana ◽  
...  
Keyword(s):  
Y Chromosome ◽  
Haplotype Analysis ◽  
Chromosome Haplotype

Y chromosome haplotype analysis in purebred dogs

2005 ◽  
Vol 16 (4) ◽  
pp. 273-280 ◽  
Author(s):  
Danika L. Bannasch ◽  
Michael J. Bannasch ◽  
Jeanne R. Ryun ◽  
Thomas R. Famula ◽  
Niels C. Pedersen
Keyword(s):  
Y Chromosome ◽  
Haplotype Analysis ◽  
Purebred Dogs ◽  
Chromosome Haplotype

Genetic structure of Mediterranean populations revealed by Y-chromosome haplotype analysis

2003 ◽  
Vol 121 (2) ◽  
pp. 157-171 ◽  
Author(s):  
Llu�s Quintana-Murci ◽  
Reiner Veitia ◽  
Marc Fellous ◽  
Ornella Semino ◽  
Estella S. Poloni
Keyword(s):  
Genetic Structure ◽  
Y Chromosome ◽  
Haplotype Analysis ◽  
Mediterranean Populations ◽  
Chromosome Haplotype

scholarly journals Copy Number Variations of Four Y-Linked Genes in Swamp Buffaloes

Animals ◽  
2019 ◽  
Vol 10 (1) ◽  
pp. 31
Author(s):  
Ting Sun ◽  
Quratulain Hanif ◽  
Hong Chen ◽  
Chuzhao Lei ◽  
Ruihua Dang
Keyword(s):  
Y Chromosome ◽  
Copy Number ◽  
Water Buffalo ◽  
Single Copy ◽  
Copy Number Variations ◽  
Tetratricopeptide Repeat ◽  
Dead Box ◽  
Complex Phenotypes ◽  
Swamp Buffaloes ◽  
Number Variation

Copy number variation (CNV), a significant source of genetic diversity in the mammalian Y chromosome, is associated with the development of many complex phenotypes, such as spermatogenesis and male fertility. The contribution of Y-linked CNVs has been studied in various species, however, water buffalo has not been explored in this area and the genetic information still remains unknown. The aim of the current study was to investigate the CNVs of four Y-linked genes, including, sex determining Region of Y-Chromosome (SRY), ubiquitously transcribed tetratricopeptide repeat gene protein on the chromosome Y (UTY), DEAD-box helicase 3 Y-linked (DDX3Y, also known as DBY), and oral-facial-digital syndrome 1 Y-linked (OFD1Y) in 254 swamp buffaloes from 15 populations distributed across China, Vietnam, and Laos using quantitative real-time PCR (qPCR). Our results revealed the prevalence of a single-copy UTY gene in buffaloes. The DBY and OFD1Y represented CNVs among and within different buffalo breeds. The SRY showed CNVs only in Vietnamese and Laotian buffaloes. In conclusion, this study indicated that DBY, OFD1Y, and SRY showed CNVs, while the UTY was a single-copy gene in swamp buffaloes.

scholarly journals A counter-clockwise northern route of the Y-chromosome haplogroup N from Southeast Asia towards Europe

2006 ◽  
Vol 15 (2) ◽  
pp. 204-211 ◽  
Author(s):  
Siiri Rootsi ◽  
Lev A Zhivotovsky ◽  
Marian Baldovič ◽  
Manfred Kayser ◽  
Ildus A Kutuev ◽  
...  
Keyword(s):  
Southeast Asia ◽  
Y Chromosome

scholarly journals Opportunities and Challenges for Improving the Productivity of Swamp Buffaloes in Southeastern Asia

2021 ◽  
Vol 12 ◽  
Author(s):  
Paulene S. Pineda ◽  
Ester B. Flores ◽  
Jesus Rommel V. Herrera ◽  
Wai Yee Low
Keyword(s):  
Food Security ◽  
Southeast Asia ◽  
Current Status ◽  
Agriculture Industry ◽  
Swamp Buffaloes ◽  
Agricultural Animal ◽  
Farm Mechanization ◽  
Genomic Markers ◽  
Swamp Buffalo ◽  
And Migration

The swamp buffalo is a domesticated animal commonly found in Southeast Asia. It is a highly valued agricultural animal for smallholders, but the production of this species has unfortunately declined in recent decades due to rising farm mechanization. While swamp buffalo still plays a role in farmland cultivation, this species’ purposes has shifted from draft power to meat, milk, and hide production. The current status of swamp buffaloes in Southeast Asia is still understudied compared to its counterparts such as the riverine buffaloes and cattle. This review discusses the background of swamp buffalo, with an emphasis on recent work on this species in Southeast Asia, and associated genetics and genomics work such as cytogenetic studies, phylogeny, domestication and migration, genetic sequences and resources. Recent challenges to realize the potential of this species in the agriculture industry are also discussed. Limited genetic resource for swamp buffalo has called for more genomics work to be done on this species including decoding its genome. As the economy progresses and farm mechanization increases, research and development for swamp buffaloes are focused on enhancing its productivity through understanding the genetics of agriculturally important traits. The use of genomic markers is a powerful tool to efficiently utilize the potential of this animal for food security and animal conservation. Understanding its genetics and retaining and maximizing its adaptability to harsher environments are a strategic move for food security in poorer nations in Southeast Asia in the face of climate change.

Excavating Y-chromosome haplotype strata in Anatolia

2004 ◽  
Vol 114 (2) ◽  
pp. 127-148 ◽  
Author(s):  
Cengiz Cinnioglu ◽  
Roy King ◽  
Toomas Kivisild ◽  
Ersi Kalfoglu ◽  
Sevil Atasoy ◽  
...  
Keyword(s):  
Y Chromosome ◽  
Chromosome Haplotype

scholarly journals New Advances Reconstructing the Y Chromosome Haplotype of Napoleon the First Based on Three of his Living Descendants

2014 ◽  
Vol 5 (1) ◽  
pp. 1
Author(s):  
Gerard Lucotte ◽  
Peter Hrechdakian
Keyword(s):  
Y Chromosome ◽  
Short Tandem Repeats ◽  
Tandem Repeats ◽  
Fifth Generation ◽  
Napoleon I ◽  
Chromosome Haplotype ◽  
Short Tandem

This paper describes the findings of the complete reconstruction of the lineage Y chromosome haplotype of the French Emperor Napoléon I. In a previous study (Lucotte et al., 2013) we reconstructed, for more than one hundred Y-STRs (Y–short tandem repeats), the Y-chromosome haplotype of Napoléon I based on data comparing STR allelic values obtained from the DNA of two of his living descendants: Charles Napoléon (C.N.) and Alexandre Colonna Walewski (A.C.W.); in the present study we compare STR allelic values of C.N. and A.C.W. to those of Mike Clovis (M.C.), a living fifth generation descendant of Lucien (one of Napoléon’s brothers). When compared between M.C., C.N. and A.C.W., STR allelic values are identical for a total of 93 STRs; that permits us to propose those values, for which the three living descendants are identical, as expected allelic values of Napoléon I’s Y-chromosome haplotype. For seven STRs, allele values are variable between M.C., C.N. and A.C.W.; we propose for three of them (DYS442, DYS454 and DYS712) expected allelic values, based on data concerning the allele distributions of these STRs in the population.

scholarly journals Y Chromosome Analysis of Dingoes and Southeast Asian Village Dogs Suggests a Neolithic Continental Expansion from Southeast Asia Followed by Multiple Austronesian Dispersals

2013 ◽  
Vol 30 (5) ◽  
pp. 1103-1118 ◽  
Author(s):  
Benjamin N. Sacks ◽  
Sarah K. Brown ◽  
Danielle Stephens ◽  
Niels C. Pedersen ◽  
Jui-Te Wu ◽  
...  
Keyword(s):  
Southeast Asia ◽  
Y Chromosome ◽  
Chromosome Analysis ◽  
Southeast Asian
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