Improved multiplex TaqMan qPCR assay with universal internal control offers reliable and accurate detection of Clavibacter michiganensis

2021 ◽  
Author(s):  
S. Ramachandran ◽  
S. Dobhal ◽  
A.M. Alvarez ◽  
M. Arif
Keyword(s):  
Internal Control ◽  
Qpcr Assay ◽  
Clavibacter Michiganensis ◽  
Accurate Detection ◽  
Taqman Qpcr Assay ◽  
Taqman Qpcr

A multiplex TaqMan qPCR assay for detection and quantification of clade 1 and clade 2 isolates of Pseudoperonospora cubensis and Pseudoperonospora humuli

Plant Disease ◽  
2021 ◽  
Author(s):  
Sharifa G. Crandall ◽  
Marina Ramon ◽  
Alyssa Burkhardt ◽  
Julian Camilo Bello Rodriguez ◽  
Nanci Adair ◽  
...  
Keyword(s):  
Internal Control ◽  
Plant Pathogens ◽  
Infected Plant ◽  
Extraction Process ◽  
Qpcr Assay ◽  
Control Measures ◽  
Management Options ◽  
Clade 1 ◽  
Taqman Qpcr Assay ◽  
Taqman Qpcr

The ability to detect and quantify aerially dispersed plant pathogens is essential for developing effective disease control measures and epidemiological models that optimize the timing for control . There is an acute need for managing the downy mildew pathogens infecting cucurbits and hop incited by members of the genus Pseudoperonospora (P. cubensis clade 1 and 2 isolates and P. humuli, respectively). A highly specific multiplex TaqMan qPCR assay targeting unique sequences in the pathogens’ mitochondrial genomes was developed that enables detection of all three taxa in a single multiplexed amplification. An internal control included in the reaction evaluated if results were influenced by PCR inhibitors that can make it through the DNA extraction process. Reliable quantification of inoculum as low as three sporangia in a sample was observed. The multiplexed assay was tested with DNA extracted from purified sporangia, infected plant tissue and environmental samples collected on impaction spore traps samplers. The ability to accurately detect and simultaneously quantify all three pathogens in a single multiplexed amplification should improve management options for controlling the diseases they cause.

scholarly journals Dynamics of Specific cfDNA Fragments in the Plasma of Full Marathon Participants

Genes ◽  
2021 ◽  
Vol 12 (5) ◽  
pp. 676
Author(s):  
Takehito Sugasawa ◽  
Shin-ichiro Fujita ◽  
Tomoaki Kuji ◽  
Noriyo Ishibashi ◽  
Kenshirou Tamai ◽  
...  
Keyword(s):  
Exercise Physiology ◽  
High Sensitivity ◽  
Genomic Region ◽  
Qpcr Assay ◽  
Strongly Correlated ◽  
Healthy Humans ◽  
Blood Cell And Plasma ◽  
Next Generation Sequencing Ngs ◽  
Taqman Qpcr Assay ◽  
Taqman Qpcr

Plasma cell-free DNA (cfDNA) is frequently analyzed using liquid biopsy to investigate cancer markers. We hypothesized that this concept might be applicable in exercise physiology. Here, we aimed to identify specific cfDNA (spcfDNA) sequences in the plasma of healthy humans using next-generation sequencing (NGS) and clearly define the dynamics regarding spcfDNA-fragment levels upon extreme exercises, such as running a full marathon. NGS analysis was performed using cfDNA of pooled plasma collected from healthy participants. We confirmed that the TaqMan-qPCR assay had high sensitivity and found that the spcfDNA sequence abundance was 16,600-fold higher than that in a normal genomic region. We then used the TaqMan-qPCR assay to investigate the dynamics of spcfDNA-fragment levels upon running a full marathon. The spcfDNA fragment levels were significantly increased post-marathon. Furthermore, spcfDNA fragment levels were strongly correlated with white blood cell and plasma myoglobin concentrations. These results suggest the spcfDNA fragments identified in this study were highly sensitive as markers of extreme physical stress. The findings of this study may provide new insights into exercise physiology and genome biology in humans.

scholarly journals A multiplex TaqMan qPCR assay for sensitive and rapid detection of phytoplasmas infecting Rubus species

PLoS ONE ◽  
2017 ◽  
Vol 12 (5) ◽  
pp. e0177808 ◽  
Author(s):  
Holger Linck ◽  
Erika Krüger ◽  
Annette Reineke
Keyword(s):  
Rapid Detection ◽  
Qpcr Assay ◽  
Rubus Species ◽  
Taqman Qpcr Assay ◽  
Taqman Qpcr

Development and evaluation of a direct TaqMan qPCR assay for the rapid detection of diverse carnivore amdoparvoviruses

2019 ◽  
Vol 48 ◽  
pp. 101448
Author(s):  
Yan-Hong Wu ◽  
Tao Wei ◽  
Xiu-Ting Zhang ◽  
Yong-Qiang Zhao ◽  
Jian-Ke Wang ◽  
...  
Keyword(s):  
Rapid Detection ◽  
Qpcr Assay ◽  
Taqman Qpcr Assay ◽  
Taqman Qpcr

scholarly journals Detection of Multiple Transgene Fragments in a Mouse Model of Gene Doping Based on Plasmid Vector Using TaqMan-qPCR Assay

Genes ◽  
2020 ◽  
Vol 11 (7) ◽  
pp. 750
Author(s):  
Takehito Sugasawa ◽  
Kai Aoki ◽  
Kouki Yanazawa ◽  
Kazuhiro Takekoshi
Keyword(s):  
Whole Blood ◽  
Abdominal Cavity ◽  
Plasmid Vector ◽  
Firefly Luciferase ◽  
Qpcr Assay ◽  
Gold Standard Method ◽  
Gene Doping ◽  
Taqman Qpcr Assay ◽  
Taqman Qpcr

The World Anti-Doping Agency has prohibited gene doping in the context of progress in gene therapy. There is a risk that the augmentation of genes using plasmids could be applied for gene doping. However, no gold standard method to detect this has been established. Here, we aimed to develop a method to detect multiple transgene fragments as proof of gene doping. Firstly, gene delivery model mice as a mimic of gene doping were created by injecting firefly luciferase plasmid with polyethylenimine (PEI) into the abdominal cavity. The results confirmed successful establishment of the model, with sufficient luminescence upon in vivo imaging. Next, multiple transgene fragments in the model were detected in plasma cell-free (cf)DNA, blood-cell-fraction DNA, and stool DNA using the TaqMan- quantitative real-time PCR(qPCR) assay, with the highest levels in plasma cfDNA. Using just a single drop of whole blood from the model, we also attempted long-term detection. The results showed that multiple transgene fragments were detected until 11 days. These findings indicate that the combination of plasma cfDNA or just one drop of whole blood with TaqMan-qPCR assay is feasible to detect plasmid-PEI-based gene doping. Our findings could accelerate the development of methods for detecting gene doping in humans.

scholarly journals A triplex probe-based TaqMan qPCR assay for Calreticulin type I and II mutation detection

Hematology ◽  
2018 ◽  
Vol 24 (1) ◽  
pp. 26-31 ◽  
Author(s):  
Yigui Tang ◽  
Changgen Shi ◽  
Zhiyuan Wu ◽  
Ni Fan ◽  
Xiao Xu ◽  
...  
Keyword(s):  
Mutation Detection ◽  
Qpcr Assay ◽  
Type I ◽  
Taqman Qpcr Assay ◽  
Taqman Qpcr

Quantification of Salmonella spp. in composted biosolids using a TaqMan qPCR assay

2007 ◽  
Vol 70 (1) ◽  
pp. 119-126 ◽  
Author(s):  
Amy Novinscak ◽  
Céline Surette ◽  
Martin Filion
Keyword(s):  
Qpcr Assay ◽  
Salmonella Spp ◽  
Taqman Qpcr Assay ◽  
Taqman Qpcr
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