Leveraging observed soil heterotrophic respiration fluxes as a novel constraint on global‐scale models

2021 ◽  
Author(s):  
Jinshi Jian ◽  
Ben Bond‐Lamberty ◽  
Dalei Hao ◽  
Benjamin N. Sulman ◽  
Kaizad F. Patel ◽  
...  
Keyword(s):  
Global Scale ◽  
Heterotrophic Respiration ◽  
Scale Models ◽  
Soil Heterotrophic Respiration

Global scale hydrological modelling at 100 m, 1 h resolution, in Python

2021 ◽  
Author(s):  
Kor de Jong ◽  
Marc van Kreveld ◽  
Debabrata Panja ◽  
Oliver Schmitz ◽  
Derek Karssenberg
Keyword(s):  
Large Scale ◽  
Model Building ◽  
Flow Direction ◽  
Building Blocks ◽  
Global Scale ◽  
Data Availability ◽  
Hydrological Models ◽  
Continental Scale ◽  
Modelling Framework ◽  
Scale Models

<p>Data availability at global scale is increasing exponentially. Although considerable challenges remain regarding the identification of model structure and parameters of continental scale hydrological models, we will soon reach the situation that global scale models could be defined at very high resolutions close to 100 m or less. One of the key challenges is how to make simulations of these ultra-high resolution models tractable ([1]).</p><p>Our research contributes by the development of a model building framework that is specifically designed to distribute calculations over multiple cluster nodes. This framework enables domain experts like hydrologists to develop their own large scale models, using a scripting language like Python, without the need to acquire the skills to develop low-level computer code for parallel and distributed computing.</p><p>We present the design and implementation of this software framework and illustrate its use with a prototype 100 m, 1 h continental scale hydrological model. Our modelling framework ensures that any model built with it is parallelized. This is made possible by providing the model builder with a set of building blocks of models, which are coded in such a manner that parallelization of calculations occurs within and across these building blocks, for any combination of building blocks. There is thus full flexibility on the side of the modeller, without losing performance.</p><p>This breakthrough is made possible by applying a novel approach to the implementation of the model building framework, called asynchronous many-tasks, provided by the HPX C++ software library ([3]). The code in the model building framework expresses spatial operations as large collections of interdependent tasks that can be executed efficiently on individual laptops as well as computer clusters ([2]). Our framework currently includes the most essential operations for building large scale hydrological models, including those for simulating transport of material through a flow direction network. By combining these operations, we rebuilt an existing 100 m, 1 h resolution model, thus far used for simulations of small catchments, requiring limited coding as we only had to replace the computational back end of the existing model. Runs at continental scale on a computer cluster show acceptable strong and weak scaling providing a strong indication that global simulations at this resolution will soon be possible, technically speaking.</p><p>Future work will focus on extending the set of modelling operations and adding scalable I/O, after which existing models that are currently limited in their ability to use the computational resources available to them can be ported to this new environment.</p><p>More information about our modelling framework is at https://lue.computationalgeography.org.</p><p><strong>References</strong></p><p>[1] M. Bierkens. Global hydrology 2015: State, trends, and directions. Water Resources Research, 51(7):4923–4947, 2015.<br>[2] K. de Jong, et al. An environmental modelling framework based on asynchronous many-tasks: scalability and usability. Submitted.<br>[3] H. Kaiser, et al. HPX - The C++ standard library for parallelism and concurrency. Journal of Open Source Software, 5(53):2352, 2020.</p>

scholarly journals A moisture function of soil heterotrophic respiration that incorporates microscale processes

2018 ◽  
Vol 9 (1) ◽  
Author(s):  
Zhifeng Yan ◽  
Ben Bond-Lamberty ◽  
Katherine E. Todd-Brown ◽  
Vanessa L. Bailey ◽  
SiLiang Li ◽  
...  
Keyword(s):  
Heterotrophic Respiration ◽  
Soil Heterotrophic Respiration

scholarly journals Application of global models and satellite data for smaller-scale groundwater recharge studies

2016 ◽  
Author(s):  
Rogier Westerhoff ◽  
Paul White ◽  
Zara Rawlinson
Keyword(s):  
New Zealand ◽  
Satellite Data ◽  
Input Data ◽  
Large Scale ◽  
Regional Scale ◽  
Global Scale ◽  
Global Models ◽  
Scale Models ◽  
Boundary Issues ◽  
Rainfall Recharge

Abstract. Large-scale models and satellite data are increasingly used to characterise groundwater and its recharge at the global scale. Although these models have the potential to fill in data gaps and solve trans-boundary issues, they are often neglected in smaller-scale studies, since data are often coarse or uncertain. Large-scale models and satellite data could play a more important role in smaller-scale (i.e., national or regional) studies, if they could be adjusted to fit that scale. In New Zealand, large-scale models and satellite data are not used for groundwater recharge estimation at the national scale, since regional councils (i.e., the water managers) have varying water policy and models are calibrated at the local scale. Also, some regions have many localised ground observations (but poor record coverage), whereas others are data-sparse. Therefore, estimation of recharge is inconsistent at the national scale. This paper presents an approach to apply large-scale, global, models and satellite data to estimate rainfall recharge at the national to regional scale across New Zealand. We present a model, NGRM, that is largely inspired by the global-scale WaterGAP recharge model, but is improved and adjusted using national data. The NGRM model uses MODIS-derived ET and vegetation satellite data, and the available nation-wide datasets on rainfall, elevation, soil and geology. A valuable addition to the recharge estimation is the model uncertainty estimate, based on variance, covariance and sensitivity of all input data components in the model environment. This research shows that, with minor model adjustments and use of improved input data, large-scale models and satellite data can be used to derive rainfall recharge estimates, including their uncertainty, at the smaller scale, i.e., national and regional scale of New Zealand. The estimated New Zealand recharge of the NGRM model compare well to most local and regional lysimeter data and recharge models. The NGRM is therefore assumed to be capable to fill in gaps in data-sparse areas and to create more consistency between datasets from different regions, i.e., to solve trans-boundary issues. This research also shows that smaller-scale recharge studies in New Zealand should include larger boundaries than only a (sub-)aquifer, and preferably the whole catchment. This research points out the need for improved collaboration on the international to national to regional levels to further merge large-scale (global) models to smaller (i.e., national or regional) scales. Future research topics should, collaboratively, focus on: improvement of rainfall-runoff and snowmelt methods; inclusion of river recharge; further improvement of input data (rainfall, evapotranspiration, soil and geology); and the impact of recharge uncertainty in mountainous and irrigated areas.

scholarly journals Soil heterotrophic respiration assessment using minimally disturbed soil microcosm cores

MethodsX ◽  
2018 ◽  
Vol 5 ◽  
pp. 834-840 ◽  
Author(s):  
Louis-Pierre Comeau ◽  
Derrick Y.F. Lai ◽  
Jane Jinglan Cui ◽  
Jodie Hartill
Keyword(s):  
Soil Microcosm ◽  
Heterotrophic Respiration ◽  
Disturbed Soil ◽  
Soil Heterotrophic Respiration

Are Earth system models able to reproduce the soil heterotrophic respiration fluxes?

2021 ◽  
Author(s):  
Bertrand Guenet ◽  
Jérémie Orliac ◽  
Lauric Cécillon ◽  
Olivier Torres ◽  
Laurent Bopp
Keyword(s):  
Soil Respiration ◽  
Coupled Model ◽  
Global Scale ◽  
Heterotrophic Respiration ◽  
Earth System ◽  
Mixed Effect ◽  
Microbial Decomposition ◽  
System Models ◽  
Earth System Models ◽  
Climate Dynamic

<p>Earth system models (ESMs) are numerical representations of the Earth system aiming at representing the climate dynamic including feedbacks between climate and carbon cycle. CO<sub>2</sub> flux due to soil respiration including heterotrophic respiration coming from the soil organic matter (SOM) microbial decomposition and autotrophic respiration coming from the roots respiration is one of the most important flux between the surface and the atmosphere. Thus, even small changes in this flux may impact drastically the climate dynamic. It is therefore essential that ESMs reliably reproduce soil respiration. Until recently, such an evaluation at global scale of the ESMs was not straightforward because of the absence of observation-derived product to evaluate heterotrophic respiration fluxes from ESMs at global scale. Recently, several gridded products were published opening a new research avenue on climate-carbon feedbacks. In this study, we used simulations from 13 ESMs performed within the sixth coupled model intercomparison project (CMIP6) and we evaluate their capacities to reproduce the heterotrophic respiration flux using three gridded observation-based products. We first evaluate the total heterotrophic respiration flux for each model as well as the spatial patterns. We observed that most of the models are able to reproduce the total heterotrophic respiration flux but the spatial analysis underlined that this was partially due to some bias compensation between regions overestimating the flux and regions underestimating the flux. To better identify the causes of the identified bias in predicting the total heterotrophic respiration flux, we analysed the residues of ESMs using linear mixed effect models and we observed that lithology and climate were the most important drivers of the ESMs residues. Our results suggest that the response of SOM microbial decomposition to soil moisture and temperature must be improved in the next ESMs generation and that the effect of lithology should be better taken into account.</p>

Fifty years of crop residue management have a limited impact on soil heterotrophic respiration

2013 ◽  
Vol 180 ◽  
pp. 102-111 ◽  
Author(s):  
Pauline Buysse ◽  
Anne-Caroline Schnepf-Kiss ◽  
Monique Carnol ◽  
Sandrine Malchair ◽  
Christian Roisin ◽  
...  
Keyword(s):  
Crop Residue ◽  
Heterotrophic Respiration ◽  
Residue Management ◽  
Crop Residue Management ◽  
Limited Impact ◽  
Soil Heterotrophic Respiration

Integrating Mycorrhizas Into Global Scale Models

2017 ◽  
pp. 479-499 ◽  
Author(s):  
E.R. Brzostek ◽  
K.T. Rebel ◽  
K.R. Smith ◽  
R.P. Phillips
Keyword(s):  
Global Scale ◽  
Scale Models
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