scholarly journals Joint effects of population size and isolation on genetic erosion in fragmented populations: finding fragmentation thresholds for management

2014 ◽  
Vol 7 (4) ◽  
pp. 506-518 ◽  
Author(s):  
María Méndez ◽  
Matthias Vögeli ◽  
José L. Tella ◽  
José A. Godoy
Keyword(s):  
Population Size ◽  
Genetic Erosion ◽  
Joint Effects ◽  
Fragmented Populations ◽  
Fragmentation Thresholds

scholarly journals Population size, habitat fragmentation, and the nature of adaptive variation in a stream fish

2014 ◽  
Vol 281 (1790) ◽  
pp. 20140370 ◽  
Author(s):  
Dylan J. Fraser ◽  
Paul V. Debes ◽  
Louis Bernatchez ◽  
Jeffrey A. Hutchings
Keyword(s):  
Genetic Variation ◽  
Habitat Fragmentation ◽  
Population Size ◽  
Brook Trout ◽  
Small Populations ◽  
Adaptive Genetic Variation ◽  
Genetic Population ◽  
Fragmented Populations ◽  
Large Populations ◽  
Adaptive Differentiation

Whether and how habitat fragmentation and population size jointly affect adaptive genetic variation and adaptive population differentiation are largely unexplored. Owing to pronounced genetic drift, small, fragmented populations are thought to exhibit reduced adaptive genetic variation relative to large populations. Yet fragmentation is known to increase variability within and among habitats as population size decreases. Such variability might instead favour the maintenance of adaptive polymorphisms and/or generate more variability in adaptive differentiation at smaller population size. We investigated these alternative hypotheses by analysing coding-gene, single-nucleotide polymorphisms associated with different biological functions in fragmented brook trout populations of variable sizes. Putative adaptive differentiation was greater between small and large populations or among small populations than among large populations. These trends were stronger for genetic population size measures than demographic ones and were present despite pronounced drift in small populations. Our results suggest that fragmentation affects natural selection and that the changes elicited in the adaptive genetic composition and differentiation of fragmented populations vary with population size. By generating more variable evolutionary responses, the alteration of selective pressures during habitat fragmentation may affect future population persistence independently of, and perhaps long before, the effects of demographic and genetic stochasticity are manifest.

scholarly journals Conservation Assessment of the State Goat Farms by Using SNP Genotyping Data

Genes ◽  
2020 ◽  
Vol 11 (6) ◽  
pp. 652
Author(s):  
Rabiul Islam ◽  
Zhangfa Liu ◽  
Yefang Li ◽  
Lin Jiang ◽  
Yuehui Ma
Keyword(s):  
Genetic Resources ◽  
Population Size ◽  
Effective Population Size ◽  
Management Practices ◽  
Genetic Erosion ◽  
The State ◽  
Genomic Relationship ◽  
Effective Population ◽  
Conservation Assessment ◽  
Goat Farm

Conservation of genetic resources is of great concern globally to maintain genetic diversity for sustainable food security. Comprehensive identification of the breed composition, estimation of inbreeding and effective population size are essential for the effective management of farm animal genetic resources and to prevent the animals from genetic erosion. The Zhongwei male (ZWM), Arbas Cashmere male (ACM) and Jining Grey male (JGM) goats are conserved in three different state goat farms in China but their family information, level of inbreeding and effective population size are unknown. We investigated the genomic relationship, inbreeding coefficient and effective population size in these three breeds from three state goat farms using the Illumina goat SNP50 BeadChip. Genomic relationships and phylogenetic analysis revealed that the breeds are clearly separated and formed separate clusters based on their genetic relationship. We obtained a high proportion of informative SNPs, ranging from 91.8% in the Arbas Cashmere male to 96.2% in the Jining Grey male goat breeds with an average mean of 96.8%. Inbreeding, as measured by FROH, ranged from 1.79% in ZWM to 8.62% in ACM goat populations. High FROH values, elevated genomic coverage of very long ROH (>30 Mb) and severe decline in effective population size were recorded in ACM goat farm. The existence of a high correlation between FHOM and FROH indicates that FROH can be used as an alternative to inbreeding estimates in the absence of pedigree records. The Ne estimates 13 generations ago were 166, 69 and 79 for ZWM, ACM and JGM goat farm, respectively indicating that these goat breeds were strongly affected by selection pressure or genetic drift. This study provides insight into the genomic relationship, levels of inbreeding and effective population size in the studied goat populations conserved in the state goat farms which will be valuable in prioritizing populations for conservation and for developing suitable management practices for further genetic improvement of these Chinese male goats.

scholarly journals Comparing Genetic Diversity in Three Threatened Oaks

Forests ◽  
2021 ◽  
Vol 12 (5) ◽  
pp. 561
Author(s):  
Emma Suzuki Spence ◽  
Jeremie B. Fant ◽  
Oliver Gailing ◽  
M. Patrick Griffith ◽  
Kayri Havens ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Population Size ◽  
Rare Species ◽  
Genetic Erosion ◽  
Geographic Range ◽  
Range Size ◽  
Ex Situ ◽  
Botanic Gardens ◽  
Geographic Range Size

Genetic diversity is a critical resource for species’ survival during times of environmental change. Conserving and sustainably managing genetic diversity requires understanding the distribution and amount of genetic diversity (in situ and ex situ) across multiple species. This paper focuses on three emblematic and IUCN Red List threatened oaks (Quercus, Fagaceae), a highly speciose tree genus that contains numerous rare species and poses challenges for ex situ conservation. We compare the genetic diversity of three rare oak species—Quercus georgiana, Q. oglethorpensis, and Q. boyntonii—to common oaks; investigate the correlation of range size, population size, and the abiotic environment with genetic diversity within and among populations in situ; and test how well genetic diversity preserved in botanic gardens correlates with geographic range size. Our main findings are: (1) these three rare species generally have lower genetic diversity than more abundant oaks; (2) in some cases, small population size and geographic range correlate with genetic diversity and differentiation; and (3) genetic diversity currently protected in botanic gardens is inadequately predicted by geographic range size and number of samples preserved, suggesting non-random sampling of populations for conservation collections. Our results highlight that most populations of these three rare oaks have managed to avoid severe genetic erosion, but their small size will likely necessitate genetic management going forward.

Genetic Diversity Within and Among Populations of Shorea Robusta Roxb. Ex Gaertn. In Bangladesh and Its Implications for Conservation

2021 ◽  
Vol 50 (2) ◽  
pp. 405-412
Author(s):  
Pragga Saha Sharmi ◽  
Md Abul Kashem ◽  
Rifat Samad ◽  
Mohammad Zabed Hossain
Keyword(s):  
Genetic Diversity ◽  
Population Size ◽  
Isolation By Distance ◽  
Genetic Erosion ◽  
Mantel Test ◽  
Small Population ◽  
Deciduous Forests ◽  
Shorea Robusta ◽  
Low Genetic Diversity ◽  
Geographical Regions

Fragmentation and reduction of natural population size render threats to the conservation of forest resources through depletion of genetic diversity. Hence, information on genetic structure of Sal (Shorea robusta Roxb. ex Gaertn.) populations is relevant for proper management and conservation of the tropical deciduous forests. The present study focused on assessing the genetic diversity of the populations of Sal which was the dominant tree species of the deciduous forests of Bangladesh. Plant leaf samples were collected from the three populations of Sal distributed in the three geographical regions including Madhupur tract in the districts Tangail and Gazipur and that of the districts of Cumilla and Dinajpur. DNA band profiles were generated using eight ISSR primers for a total of 13 samples taken from the three populations. Statistical analysis was done using PopGen 32 and GenAlEx 6.5 softwares. Principal coordinate analysis done on the DNA band profiles revealed that Sal populations of Madhupur tract and Cumilla positioned nearby while Dinajpur showed maximum genetic distance with that of Cumilla. Mantel test showed significant (p=0.05) correlation between genetic and geographic distances indicating “Isolation by Distance”. Data of the present study indicated higher genetic polymorphism (68.87%) in the Sal population of Madhupur tract compared to other two populations. Small population size of Sal of Dinajpur forest might be related with its low genetic diversity. Data of the present study suggest immediate attention for the conservation of Sal forests in Bangladesh before further genetic erosion occurs. Bangladesh J. Bot. 50(2): 405-412, 2021 (June)

Population-size effects on seeds and seedlings from fragmented eucalypt populations: implications for seed sourcing for ecological restoration

2007 ◽  
Vol 55 (3) ◽  
pp. 390 ◽  
Author(s):  
Siegfried L. Krauss ◽  
Luise Hermanutz ◽  
Stephen D. Hopper ◽  
David J. Coates
Keyword(s):  
Population Size ◽  
Ecological Restoration ◽  
Seed Production ◽  
Size Effects ◽  
Seedling Survival ◽  
Seed Maturation ◽  
Source Population ◽  
Long Distance ◽  
Fragmented Populations ◽  
Fitness Effects

Ecological restoration of degraded habitats is a major conservation activity requiring the collection of large amounts of native seed. Seed production and the genetic quality of seed may be influenced by properties of the source population, such as population size and fragmentation, potentially having an impact on restoration goals. We assessed the population-size effects on seed production and seedling performance in two Western Australian wheatbelt eucalypts, Eucalyptus salmonophloia F.Muell. and E. salubris F.Muell. Both species were historically widespread and dominant, but, as a consequence of land-clearing for agriculture, now exist as small, highly fragmented populations throughout the western half of their range. Given their former importance in the landscape, these species will be critical in ecological restoration of the region. We assessed small (n = 6–12) and large (n > 200) remnant populations in a highly fragmented landscape and compared these to large unfragmented populations. Seed number per capsule was dependent on population size and fragmentation for E. salubris, but not for E. salmonophloia. Large, unfragmented populations of E. salubris produced more than twice the number of seeds per capsule (mean = 2.95) than small and/or fragmented populations. However, seed germination, seed weight, seedling survival and seedling vigour to 1 year were independent of population size or fragmentation in both species. Our results suggest that reduced population size and increased fragmentation can negatively affect pollen quantity and/or quality, thereby limiting seed production, although no fitness effects were observed post-seed maturation. We suggest that the relative absence of post-seed maturation fitness effects in these small fragmented populations are a consequence of (1) wide outcrossing resulting from long-distance dispersal of pollen by highly mobile birds among fragmented populations and/or (2) efficient pre- or post-zygotic selection against more homozygous zygotes within fruits so that only relatively outbred seeds mature. The consequences on seed collection for ecological restoration of reduced population size and increased fragmentation for these eucalypts may be fewer seeds for the same collecting effort, but no apparent fitness effects of mature seeds. However, caution should be exercised when harvesting seed from these smaller populations, as over-harvesting may have an impact on recruitment and hence long-term persistence.

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