scholarly journals Long‐distance gene flow outweighs a century of local selection and prevents local adaptation in the Irish famine pathogen P hytophthora infestans

2014 ◽  
Vol 7 (4) ◽  
pp. 442-452 ◽  
Author(s):  
Isabelle Glais ◽  
Josselin Montarry ◽  
Roselyne Corbière ◽  
Claudine Pasco ◽  
Bruno Marquer ◽  
...  
Keyword(s):  
Gene Flow ◽  
Local Adaptation ◽  
Long Distance ◽  
Irish Famine ◽  
Local Selection

scholarly journals Genomic Patterns of Local Adaptation under Gene Flow in Arabidopsis lyrata

2019 ◽  
Vol 36 (11) ◽  
pp. 2557-2571 ◽  
Author(s):  
Tuomas Hämälä ◽  
Outi Savolainen
Keyword(s):  
Gene Flow ◽  
Local Adaptation ◽  
Demographic History ◽  
Rate Variation ◽  
Arabidopsis Lyrata ◽  
Trade Offs ◽  
Northern Latitudes ◽  
Local Selection ◽  
Empirical Level ◽  
Selected Traits

AbstractShort-scale local adaptation is a complex process involving selection, migration, and drift. The expected effects on the genome are well grounded in theory but examining these on an empirical level has proven difficult, as it requires information about local selection, demographic history, and recombination rate variation. Here, we use locally adapted and phenotypically differentiated Arabidopsis lyrata populations from two altitudinal gradients in Norway to test these expectations at the whole-genome level. Demography modeling indicates that populations within the gradients diverged <2 kya and that the sites are connected by gene flow. The gene flow estimates are, however, highly asymmetric with migration from high to low altitudes being several times more frequent than vice versa. To detect signatures of selection for local adaptation, we estimate patterns of lineage-specific differentiation among these populations. Theory predicts that gene flow leads to concentration of adaptive loci in areas of low recombination; a pattern we observe in both lowland-alpine comparisons. Although most selected loci display patterns of conditional neutrality, we found indications of genetic trade-offs, with one locus particularly showing high differentiation and signs of selection in both populations. Our results further suggest that resistance to solar radiation is an important adaptation to alpine environments, while vegetative growth and bacterial defense are indicated as selected traits in the lowland habitats. These results provide insights into genetic architectures and evolutionary processes driving local adaptation under gene flow. We also contribute to understanding of traits and biological processes underlying alpine adaptation in northern latitudes.

scholarly journals Asymmetric isolating barriers between different microclimatic environments caused by low immigrant survival

2015 ◽  
Vol 282 (1802) ◽  
pp. 20142459 ◽  
Author(s):  
Thomas P. Gosden ◽  
John T. Waller ◽  
Erik I. Svensson
Keyword(s):  
Gene Flow ◽  
Local Adaptation ◽  
Survival Rates ◽  
Differential Survival ◽  
Local Survival ◽  
Local Selection ◽  
The Common ◽  
Source Sink ◽  
Field Transplant ◽  
Transplant Experiments

Spatially variable selection has the potential to result in local adaptation unless counteracted by gene flow. Therefore, barriers to gene flow will help facilitate divergence between populations that differ in local selection pressures. We performed spatially and temporally replicated reciprocal field transplant experiments between inland and coastal habitats using males of the common blue damselfly ( Enallagma cyathigerum ) as our study organism. Males from coastal populations had lower local survival rates than resident males at inland sites, whereas we detected no differences between immigrant and resident males at coastal sites, suggesting asymmetric local adaptation in a source–sink system. There were no intrinsic differences in longevity between males from the different environments suggesting that the observed differences in male survival are environment-dependent and probably caused by local adaptation. Furthermore, the coastal environment was found to be warmer and drier than the inland environment, further suggesting local adaptation to microclimatic factors has lead to differential survival of resident and immigrant males. Our results suggest that low survival of immigrant males mediates isolation between closely located populations inhabiting different microclimatic environments.

scholarly journals Linking local adaptation with the evolution of sex differences

2018 ◽  
Vol 373 (1757) ◽  
pp. 20170414 ◽  
Author(s):  
Tim Connallon ◽  
Florence Débarre ◽  
Xiang-Yi Li
Keyword(s):  
Sex Differences ◽  
Gene Flow ◽  
Local Adaptation ◽  
Evolutionary Divergence ◽  
Evolution Of Sex ◽  
Research Traditions ◽  
Local Environments ◽  
Local Selection ◽  
Research Programmes ◽  
Opposite Sex

Many conspicuous forms of evolutionary diversity occur within species. Two prominent examples include evolutionary divergence between populations differentially adapted to their local environments (local adaptation), and divergence between females and males in response to sex differences in selection (sexual dimorphism sensu lato ). These two forms of diversity have inspired vibrant research programmes, yet these fields have largely developed in isolation from one another. Nevertheless, conceptual parallels between these research traditions are striking. Opportunities for local adaptation strike a balance between local selection, which promotes divergence, and gene flow—via dispersal and interbreeding between populations—which constrains it. Sex differences are similarly constrained by fundamental features of inheritance that mimic gene flow. Offspring of each sex inherit genes from same-sex and opposite-sex parents, leading to gene flow between each differentially selected half of the population, and raising the question of how sex differences arise and are maintained. This special issue synthesizes and extends emerging research at the interface between the research traditions of local adaptation and sex differences. Each field can promote understanding of the other, and interactions between local adaptation and sex differences can generate new empirical predictions about the evolutionary consequences of selection that varies across space, time, and between the sexes. This article is part of the theme issue ‘Linking local adaptation with the evolution of sex differences’.

scholarly journals Local adaptation under gene flow: Recombination, conditional neutrality and genetic trade-offs shape genomic patterns in Arabidopsis lyrata

2018 ◽  
Author(s):  
Tuomas Hämälä ◽  
Outi Savolainen
Keyword(s):  
Gene Flow ◽  
Local Adaptation ◽  
Demographic History ◽  
Rate Variation ◽  
Arabidopsis Lyrata ◽  
Trade Offs ◽  
Northern Latitudes ◽  
Local Selection ◽  
Empirical Level ◽  
Selected Traits

AbstractShort-scale local adaptation is a complex process involving selection, migration and drift. The expected effects on the genome are well grounded in theory, but examining these on an empirical level has proven difficult, as it requires information about local selection, demographic history and recombination rate variation. Here, we use locally adapted and phenotypically differentiated Arabidopsis lyrata populations from two altitudinal gradients in Norway to test these expectations at the whole-genome level. Demography modelling indicates that populations within the gradients diverged less than 2000 years ago and that the sites are connected by gene flow. The gene flow estimates are, however, highly asymmetric with migration from high to low altitudes being several times more frequent than vice versa. To detect signatures of selection for local adaptation, we estimate patterns of lineage specific differentiation among these populations. Theory predicts that gene flow leads to concentration of adaptive loci in areas of low recombination; a pattern we observe in both lowland-alpine comparisons. Although most selected loci display patterns of conditional neutrality, we found indications of genetic trade-offs, with one locus particularly showing high divergence and signs of selection in both populations. Our results further suggest that resistance to solar radiation is an important adaptation to alpine environments, while vegetative growth and bacterial defense are indicated as selected traits in the lowland habitats. These results provide insights into genetic architectures and evolutionary processes driving local adaptation under gene flow. We also contribute to understanding of traits and biological processes underlying alpine adaptation in northern latitudes.

scholarly journals Local adaptation and the evolution of inversions on sex chromosomes and autosomes

2018 ◽  
Vol 373 (1757) ◽  
pp. 20170423 ◽  
Author(s):  
Tim Connallon ◽  
Colin Olito ◽  
Ludovic Dutoit ◽  
Homa Papoli ◽  
Filip Ruzicka ◽  
...  
Keyword(s):  
Gene Flow ◽  
Local Adaptation ◽  
Evolutionary Dynamics ◽  
Deleterious Mutation ◽  
Local Selection ◽  
Theoretical Predictions ◽  
Elevated Rate ◽  
Genomic Regions ◽  
Spatially Varying ◽  
Spatially Varying Selection

Spatially varying selection with gene flow can favour the evolution of inversions that bind locally adapted alleles together, facilitate local adaptation and ultimately drive genomic divergence between species. Several studies have shown that the rates of spread and establishment of new inversions capturing locally adaptive alleles depend on a suite of evolutionary factors, including the strength of selection for local adaptation, rates of gene flow and recombination, and the deleterious mutation load carried by inversions. Because the balance of these factors is expected to differ between X (or Z) chromosomes and autosomes, opportunities for inversion evolution are likely to systematically differ between these genomic regions, though such scenarios have not been formally modelled. Here, we consider the evolutionary dynamics of X-linked and autosomal inversions in populations evolving at a balance between migration and local selection. We identify three factors that lead to asymmetric rates of X-linked and autosome inversion establishment: (1) sex-biased migration, (2) dominance of locally adapted alleles and (3) chromosome-specific deleterious mutation loads. This theory predicts an elevated rate of fixation, and depressed opportunities for polymorphism, for X-linked inversions. Our survey of data on the genomic distribution of polymorphic and fixed inversions supports both theoretical predictions. This article is part of the theme issue ‘Linking local adaptation with the evolution of sex differences'.

scholarly journals Influence of environmental factors on the genetic variation of the aquatic macrophyte Ranunculus subrigidus on the Qinghai-Tibetan Plateau

2019 ◽  
Vol 19 (1) ◽  
Author(s):  
Zhigang Wu ◽  
Xinwei Xu ◽  
Juan Zhang ◽  
Gerhard Wiegleb ◽  
Hongwei Hou
Keyword(s):  
Genetic Diversity ◽  
Tibetan Plateau ◽  
Environmental Factors ◽  
Local Adaptation ◽  
Aquatic Macrophyte ◽  
Spatial Genetic Structure ◽  
Long Distance ◽  
Elevation Gradients ◽  
Mantel Tests ◽  
Genetic Patterns

Abstract Background Due to the environmental heterogeneity along elevation gradients, alpine ecosystems are ideal study objects for investigating how ecological variables shape the genetic patterns of natural species. The highest region in the world, the Qinghai-Tibetan Plateau, is a hotspot for the studies of evolutionary processes in plants. Many large rivers spring from the plateau, providing abundant habitats for aquatic and amphibious organisms. In the present study, we examined the genetic diversity of 13 Ranunculus subrigidus populations distributed throughout the plateau in order to elucidate the relative contribution of geographic distance and environmental dissimilarity to the spatial genetic pattern. Results A relatively low level of genetic diversity within populations was found. No spatial genetic structure was suggested by the analyses of molecular variance, Bayesian clustering analysis and Mantel tests. Partial Mantel tests and multiple matrix regression analysis showed a significant influence of the environment on the genetic divergence of the species. Both climatic and water quality variables contribute to the habitat heterogeneity of R. subrigidus populations. Conclusions Our results suggest that historical processes involving long-distance dispersal and local adaptation may account for the genetic patterns of R. subrigidus and current environmental factors play an important role in the genetic differentiation and local adaptation of aquatic plants in alpine landscapes.

Long distance pollen-mediated gene flow at a landscape level: the weed beet as a case study

2007 ◽  
Vol 16 (18) ◽  
pp. 3801-3813 ◽  
Author(s):  
STÉPHANE FÉNART ◽  
FRÉDÉRIC AUSTERLITZ ◽  
JOËL CUGUEN ◽  
JEAN-FRANÇOIS ARNAUD
Keyword(s):  
Gene Flow ◽  
Long Distance ◽  
Landscape Level

Gene flow favours local adaptation under habitat choice in ciliate microcosms

2017 ◽  
Vol 1 (9) ◽  
pp. 1407-1410 ◽  
Author(s):  
Staffan Jacob ◽  
Delphine Legrand ◽  
Alexis S. Chaine ◽  
Dries Bonte ◽  
Nicolas Schtickzelle ◽  
...  
Keyword(s):  
Gene Flow ◽  
Local Adaptation ◽  
Habitat Choice

scholarly journals Camelina (Camelina sativa L. Crantz) Crop Performance, Insect Pollinators, and Pollen Dispersal in the Northeastern US

2019 ◽  
Author(s):  
Richard Rizzitello ◽  
Chuan-Jie Zhang ◽  
Carol Auer
Keyword(s):  
Gene Flow ◽  
Honey Bees ◽  
Pollen Dispersal ◽  
Camelina Sativa ◽  
Genetically Engineered ◽  
Oilseed Crop ◽  
Crop Failure ◽  
Long Distance ◽  
Insect Visitation ◽  
Pollinating Insects

AbstractCamelina sativa (camelina) is an oilseed crop in the Brassicaceae that has been genetically engineered for the production of biofuels, dietary supplements, and other industrial compounds. Cultivation in North America is both recent and limited, so there are gaps in knowledge regarding yield, weed competition, and pollen-mediated gene flow. For these experiments, camelina ‘SO-40’ was grown for three years without weed control. Spring-sown camelina was harvested at 80-88 days with ∼1200 growing degree days (GDD) with yields of 425-508 kg/hectare. Camelina yields were the same with or without weeds, showing competitive ability in low-management conditions. Crop failure in 2015 was associated with delayed rainfall and above-average temperatures after seeding. Camelina flowers attracted pollinating insects from the Hymenoptera, Diptera, Lepidoptera, and Coleoptera. Hymenoptera included honey bees (Apis melifera), mining bees (Andrenidae), sweat bees (Halictidae), bumble bees (Bombus spp.) and leaf cutter bees (Megachilidae). Insect visitation on camelina flowers was associated with modest increases in seed yield. Honey bees comprised 28-33% of all pollinators and were shown to carry camelina pollen on their legs. Air sampling showed that wind-blown pollen was present at low concentrations at 9 m beyond the edges of the field. These experiments demonstrated for the first time that camelina pollen dispersal could occur through honey bees or wind, although bee activity would likely be more significant for long-distance gene flow.

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