Parallel rarebits: A novel, large-scale visual field screening method

2014 ◽  
Vol 97 (6) ◽  
pp. 528-533
Author(s):  
Shawn R Lin ◽  
Natalia Fijalkowski ◽  
Benjamin R Lin ◽  
Felix Li ◽  
Kuldev Singh ◽  
...  
1995 ◽  
Vol 2 (3) ◽  
pp. 117-121 ◽  
Author(s):  
Ivan M. Young ◽  
Julian L. Rait ◽  
Cathy A. Carson ◽  
Hugh R. Taylor
Keyword(s):  

1993 ◽  
Author(s):  
Tuan Vo-Dinh ◽  
Wendi Watts ◽  
Gordon H. Miller ◽  
A. Pal ◽  
DeLyle Eastwood ◽  
...  

2021 ◽  
Author(s):  
Nikita A. Khlystov

Efficient, large-scale heterologous production of enzymes is a crucial component of the biomass valorization industry. Whereas cellulose utilization has been successful in applications such as bioethanol, its counterpart lignin remains significantly underutilized despite being an abundant potential source of aromatic commodity chemicals. Fungal lignin-degrading heme peroxidases are thought to be the major agents responsible for lignin depolymerization in nature, but their large-scale production remains inaccessible due to the genetic intractability of basidiomycete fungi and the challenges in the heterologous production of these enzymes. In this study, we employ a strain engineering approach based on functional genomics to identify mutants of the model yeast Saccharomyces cerevisiae with enhanced heterologous production of lignin-degrading heme peroxidases. We show that our screening method coupling an activity-based readout with fluorescence-assisted cell sorting enables identification of two single null mutants of S. cerevisiae, pmt2 and cyt2, with up to 11-fold improved secretion of a versatile peroxidase from the lignin-degrading fungus Pleurotus eryngii. We demonstrate that the double deletion strain pmt2cyt2 displays positive epistasis, improving and even enabling production of members from all three classes of lignin-degrading fungal peroxidases. We anticipate that these mutant strains will be broadly applicable for improved heterologous production of this biotechnologically important class of enzymes.


1997 ◽  
pp. 189-192 ◽  
Author(s):  
K. Ebert ◽  
P. M. Krämer ◽  
A. A. Kettrup

2019 ◽  
pp. 1
Author(s):  
Lukas Mees ◽  
Swati Upadhyaya ◽  
Pavan Kumar ◽  
Sandal Kotawala ◽  
Shankar Haran ◽  
...  

2019 ◽  
Vol 109 (2) ◽  
pp. 318-325 ◽  
Author(s):  
Francesca Nicolì ◽  
Carmine Negro ◽  
Eliana Nutricati ◽  
Marzia Vergine ◽  
Alessio Aprile ◽  
...  

Monitoring Xylella fastidiosa is critical for eradicating or at least containing this harmful pathogen. New low-cost and rapid methods for early detection capability are very much needed. Metabolomics may play a key role in diagnosis; in fact, mobile metabolites could avoid errors in sampling due to erratically distributed pathogens. Of the various different mobile signals, we studied dicarboxylic azelaic acid (AzA) which is a key molecule for biotic stress plant response but has not yet been associated with pathogens in olive trees. We found that infected Olea europaea L. plants of cultivars Cellina di Nardò (susceptible to X. fastidiosa) and Leccino (resistant to the pathogen) showed an increase in AzA accumulation in leaf petioles and in sprigs by approximately seven- and sixfold, respectively, compared with plants negative to X. fastidiosa or affected by other pathogens. No statistically significant variation was found between the X. fastidiosa population level and the amount of AzA in either of the plant tissues, suggesting that AzA accumulation was almost independent of the amount of pathogen in the sample. Furthermore, the association of AzA with X. fastidiosa seemed to be reliable for samples judged as potentially false-negative by quantitative polymerase chain reaction (cycle threshold [Ct] > 33), considering both the absolute value of AzA concentration and the values normalized on negative samples, which diverged significantly from control plants. The accumulation of AzA in infected plants was partially supported by the differential expression of two genes (named OeLTP1 and OeLTP2) encoding lipid transport proteins (LTPs), which shared a specific domain with the LTPs involved in AzA activity in systemic acquired resistance in other plant species. The expression level of OeLTP1 and OeLTP2 in petiole samples showed significant upregulation in samples positive to X. fastidiosa of both cultivars, with higher expression levels in positive samples of Cellina di Nardò compared with Leccino, whereas the two transcripts had a low expression level (Ct > 40) in negative samples of the susceptible cultivar. Although the results derived from the quantification of AzA cannot confirm the presence of the erratically distributed X. fastidiosa, which can be definitively assessed by traditional methods, we believe they represent a fast and cheap screening method for large-scale monitoring.


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