RNA sequencing data analysis identifies a difference in gene expression profile between microglia and astrocytes after lipopolysaccharide-induced neuroinflammation

2016 ◽  
Vol 8 (1) ◽  
pp. 60-62
Author(s):  
Jun-ichi Satoh ◽  
Youhei Tosaki ◽  
Kenji Sakai ◽  
Motoaki Yanaizu ◽  
Yoshihiro Kino
Keyword(s):  
Gene Expression ◽  
Data Analysis ◽  
Rna Sequencing ◽  
Gene Expression Profile ◽  
Expression Profile ◽  
Sequencing Data ◽  
Sequencing Data Analysis

scholarly journals Spectacle: An interactive resource for ocular single-cell RNA sequencing data analysis

2020 ◽  
Vol 200 ◽  
pp. 108204 ◽  
Author(s):  
Andrew P. Voigt ◽  
S. Scott Whitmore ◽  
Nicholas D. Lessing ◽  
Adam P. DeLuca ◽  
Budd A. Tucker ◽  
...  
Keyword(s):  
Data Analysis ◽  
Single Cell ◽  
Rna Sequencing ◽  
Sequencing Data ◽  
Single Cell Rna Sequencing ◽  
Sequencing Data Analysis

scholarly journals RNA-sequencing data analysis of uterus in ovariectomized rats fed with soy protein isolate, 17β-estradiol and casein

Data in Brief ◽  
2016 ◽  
Vol 7 ◽  
pp. 1491-1496
Author(s):  
Martin J. Ronis ◽  
Horacio Gomez-Acevedo ◽  
Michael L. Blackburn ◽  
Mario A. Cleves ◽  
Rohit Singhal ◽  
...  
Keyword(s):  
Data Analysis ◽  
Rna Sequencing ◽  
Soy Protein ◽  
Soy Protein Isolate ◽  
Protein Isolate ◽  
Ovariectomized Rats ◽  
Sequencing Data ◽  
17Β Estradiol ◽  
Sequencing Data Analysis

scholarly journals Multi-perspective quality control of Illumina RNA sequencing data analysis

2016 ◽  
pp. elw035 ◽  
Author(s):  
Quanhu Sheng ◽  
Kasey Vickers ◽  
Shilin Zhao ◽  
Jing Wang ◽  
David C. Samuels ◽  
...  
Keyword(s):  
Quality Control ◽  
Data Analysis ◽  
Rna Sequencing ◽  
Sequencing Data ◽  
Sequencing Data Analysis

scholarly journals Transcriptional profiling of bovine muscle-derived satellite cells during differentiation in vitro by high throughput RNA sequencing

2015 ◽  
Vol 20 (3) ◽  
Author(s):  
Hui Li Tong ◽  
Hong Yan Yin ◽  
Wei Wei Zhang ◽  
Qian Hu ◽  
Shu Feng Li ◽  
...  
Keyword(s):  
Gene Expression ◽  
Rna Sequencing ◽  
Gene Expression Profile ◽  
Expression Profile ◽  
High Throughput ◽  
Satellite Cells ◽  
Muscle Development ◽  
Future Research ◽  
Pathway Enrichment Analysis

AbstractIn this study, we utilized high throughput RNA sequencing to obtain a comprehensive gene expression profile of muscle-derived satellite cells (MDSCs) upon induction of differentiation. MDSCs were cultured in vitro and RNA was extracted for sequencing prior to differentiation (MDSC-P), and again during the early and late differentiation (MDSC-D1, and MDSC-D3, respectively) stages. Sequence tags were assembled and analyzed by digital gene expression profile to screen for differentially expressed genes, Gene Ontology annotation, and pathway enrichment analysis. Quantitative real-time PCR was used to confirm the results of RNA sequencing. Our results indicate that certain of genes were changed during skeletal muscle cell development, cell cycle progression, and cell metabolism during differentiation of bovine MDSCs. Furthermore, we identified certain genes that could be used as novel candidates for future research of muscle development. Additionally, the sequencing results indicated that lipid metabolism might be the predominant cellular process that occurs during MDSC differentiation.

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