Nuclear mitochondrial pseudogenes in the cattle genome

2019 ◽  
Vol 51 (1) ◽  
pp. 148-149
Author(s):  
Stefan Hiendleder ◽  
Cynthia D.K. Bottema ◽  
Ronald M. Brunner
Keyword(s):  
Cattle Genome

scholarly journals Functional annotation of the cattle genome through systematic discovery and characterization of chromatin states and butyrate-induced variations

BMC Biology ◽  
2019 ◽  
Vol 17 (1) ◽  
Author(s):  
Lingzhao Fang ◽  
Shuli Liu ◽  
Mei Liu ◽  
Xiaolong Kang ◽  
Shudai Lin ◽  
...  
Keyword(s):  
Functional Annotation ◽  
Cattle Genome ◽  
Chromatin States

Copy number variation in the cattle genome

2012 ◽  
Vol 12 (4) ◽  
pp. 609-624 ◽  
Author(s):  
George E. Liu ◽  
Derek M. Bickhart
Keyword(s):  
Copy Number Variation ◽  
Copy Number ◽  
Cattle Genome ◽  
Number Variation

scholarly journals High-resolution haplotype block structure in the cattle genome

BMC Genetics ◽  
2009 ◽  
Vol 10 (1) ◽  
Author(s):  
Rafael Villa-Angulo ◽  
Lakshmi K Matukumalli ◽  
Clare A Gill ◽  
Jungwoo Choi ◽  
Curtis P Van Tassell ◽  
...  
Keyword(s):  
High Resolution ◽  
Haplotype Block ◽  
Block Structure ◽  
Cattle Genome ◽  
Haplotype Block Structure

scholarly journals Status of the Cattle Genome Map

2011 ◽  
Vol 134 (1) ◽  
pp. 1-8 ◽  
Author(s):  
D.M. Larkin
Keyword(s):  
Cattle Genome ◽  
Genome Map

scholarly journals Blastocyst Formation Rate and Transgene Expression are Associated with Gene Insertion into Safe and Non-Safe Harbors in the Cattle Genome

2017 ◽  
Vol 7 (1) ◽  
Author(s):  
Milad Khorramian Ghahfarokhi ◽  
Kianoush Dormiani ◽  
Ali Mohammadi ◽  
Farnoosh Jafarpour ◽  
Mohammad Hossein Nasr-Esfahani
Keyword(s):  
Transgene Expression ◽  
Formation Rate ◽  
Cattle Genome ◽  
Blastocyst Formation ◽  
Gene Insertion

scholarly journals Construction the first gene co-expression-based interactome in cattle

2017 ◽  
Author(s):  
Yan Chen ◽  
Yining Liu ◽  
Min Du ◽  
Wengang Zhang ◽  
Xue Gao ◽  
...  
Keyword(s):  
Dna Binding ◽  
Rna Polymerase Ii ◽  
Complex Traits ◽  
Molecular Mechanisms ◽  
Meat Production ◽  
Regulation Of Transcription ◽  
Cattle Genome ◽  
Cellular Functions ◽  
Protein Coding ◽  
Important Approach

Integrating genomic information into cattle breeding is an important approach to exploring the molecular mechanism for complex traits related to diary and meat production. To assist with genomic-based selection, a reference map of interactome is needed to fully understand genotype-phenotype relationships. To this end we constructed a co-expression analysis of 92 tissues and this represents the first systematic exploration of gene-gene relationship in cattle. By using robust WGCNA (Weighted Gene Correlation Network Analysis), we described the gene co-expression network of 13,405 protein-coding genes from the cattle genome. Using the 5,000 genes with majority variations in expression across 92 tissues, we compiled a network with 72,306 co-associations and that provides functional insights into thousands of poorly characterized proteins. Further module identifications found 55 highly organized functional clusters representing diverse cellular activities. To demonstrate the re-use of our interaction for functional genomics analysis, we extracted a sub-network associated with DNA binding genes in cattle. The subnetwork was enriched within regulation of transcription from RNA polymerase II promoter representing central cellular functions. In addition, we identified 28 novel linker genes associated with more than 100 DNA binding genes. Our WGCNA-based co-expression network reconstruction will be a valuable resource for exploring the molecular mechanisms of incompletely characterized proteins and for elucidating larger-scale patterns of functional modulization in the cattle genome.

0309 Systematic profiling of short tandem repeats in the cattle genome

2016 ◽  
Vol 94 (suppl_5) ◽  
pp. 147-147
Author(s):  
G. E. Liu ◽  
L. Xu ◽  
R. Haasl ◽  
J. Sun ◽  
Y. Zhou ◽  
...  
Keyword(s):  
Short Tandem Repeats ◽  
Tandem Repeats ◽  
Cattle Genome ◽  
Short Tandem
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