scholarly journals An automated in vitro protein folding screen applied to a human dynactin subunit

2004 ◽  
Vol 13 (2) ◽  
pp. 370-380 ◽  
Author(s):  
C. Scheich
Keyword(s):  
Protein Folding ◽  
Folding Screen ◽  
Vitro Protein

In vitro protein folding by E. coli ribosome: Unfolded protein splitting 70S to interact with 50S subunit

2008 ◽  
Vol 366 (2) ◽  
pp. 598-603 ◽  
Author(s):  
Arunima Basu ◽  
Dibyendu Samanta ◽  
Debasis Das ◽  
Saheli Chowdhury ◽  
Arpita Bhattacharya ◽  
...  
Keyword(s):  
Protein Folding ◽  
E Coli ◽  
Unfolded Protein ◽  
Vitro Protein

In vitro Protein Folding by Ribosomes from Escherichia coli, Wheat Germ and Rat Liver. The Role of the 50S Particle and its 23S rRNA

1996 ◽  
Vol 235 (3) ◽  
pp. 613-621 ◽  
Author(s):  
Biswadip Das ◽  
Subrata Chattopadhyay ◽  
Aloke Kumar Bera ◽  
Chanchal DasGupta
Keyword(s):  
Escherichia Coli ◽  
Protein Folding ◽  
Rat Liver ◽  
Wheat Germ ◽  
23S Rrna ◽  
Vitro Protein

Cyclophilin and Trigger Factor fromBacillussubtilisCatalyze in Vitro Protein Folding and Are Necessary for Viability under Starvation Conditions†

Biochemistry ◽  
1998 ◽  
Vol 37 (38) ◽  
pp. 13392-13399 ◽  
Author(s):  
Sven F. Göthel ◽  
Christian Scholz ◽  
Franz X. Schmid ◽  
Mohamed A. Marahiel
Keyword(s):  
Protein Folding ◽  
Trigger Factor ◽  
Starvation Conditions ◽  
Vitro Protein

Applicability of Instability Index for In vitro Protein Stability Prediction

2019 ◽  
Vol 26 (5) ◽  
pp. 339-347 ◽  
Author(s):  
Dilani G. Gamage ◽  
Ajith Gunaratne ◽  
Gopal R. Periyannan ◽  
Timothy G. Russell
Keyword(s):  
Protein Stability ◽  
Caulobacter Crescentus ◽  
Effect Of Temperature ◽  
Instability Index ◽  
Dipeptide Composition ◽  
Experimental Conditions ◽  
The Stability ◽  
Vitro Protein

Background: The dipeptide composition-based Instability Index (II) is one of the protein primary structure-dependent methods available for in vivo protein stability predictions. As per this method, proteins with II value below 40 are stable proteins. Intracellular protein stability principles guided the original development of the II method. However, the use of the II method for in vitro protein stability predictions raises questions about the validity of applying the II method under experimental conditions that are different from the in vivo setting. Objective: The aim of this study is to experimentally test the validity of the use of II as an in vitro protein stability predictor. Methods: A representative protein CCM (CCM - Caulobacter crescentus metalloprotein) that rapidly degrades under in vitro conditions was used to probe the dipeptide sequence-dependent degradation properties of CCM by generating CCM mutants to represent stable and unstable II values. A comparative degradation analysis was carried out under in vitro conditions using wildtype CCM, CCM mutants and two other candidate proteins: metallo-β-lactamase L1 and α -S1- casein representing stable, borderline stable/unstable, and unstable proteins as per the II predictions. The effect of temperature and a protein stabilizing agent on CCM degradation was also tested. Results: Data support the dipeptide composition-dependent protein stability/instability in wt-CCM and mutants as predicted by the II method under in vitro conditions. However, the II failed to accurately represent the stability of other tested proteins. Data indicate the influence of protein environmental factors on the autoproteolysis of proteins. Conclusion: Broader application of the II method for the prediction of protein stability under in vitro conditions is questionable as the stability of the protein may be dependent not only on the intrinsic nature of the protein but also on the conditions of the protein milieu.

scholarly journals The Interactome of Cancer-Related Lysyl Oxidase and Lysyl Oxidase-Like Proteins

Cancers ◽  
2020 ◽  
Vol 13 (1) ◽  
pp. 71
Author(s):  
Sylvain D. Vallet ◽  
Coline Berthollier ◽  
Romain Salza ◽  
Laurent Muller ◽  
Sylvie Ricard-Blum
Keyword(s):  
Protein Folding ◽  
Cancer Progression ◽  
Cellular Response ◽  
Lysyl Oxidase ◽  
Chaperone Activity ◽  
Cross Linking ◽  
Binding Assays ◽  
Vessel Development ◽  
New Interactions

The members of the lysyl oxidase (LOX) family are amine oxidases, which initiate the covalent cross-linking of the extracellular matrix (ECM), regulate ECM stiffness, and contribute to cancer progression. The aim of this study was to build the first draft of the interactome of the five members of the LOX family in order to determine its molecular functions, the biological and signaling pathways mediating these functions, the biological processes it is involved in, and if and how it is rewired in cancer. In vitro binding assays, based on surface plasmon resonance and bio-layer interferometry, combined with queries of interaction databases and interaction datasets, were used to retrieve interaction data. The interactome was then analyzed using computational tools. We identified 31 new interactions and 14 new partners of LOXL2, including the α5β1 integrin, and built an interactome comprising 320 proteins, 5 glycosaminoglycans, and 399 interactions. This network participates in ECM organization, degradation and cross-linking, cell-ECM interactions mediated by non-integrin and integrin receptors, protein folding and chaperone activity, organ and blood vessel development, cellular response to stress, and signal transduction. We showed that this network is rewired in colorectal carcinoma, leading to a switch from ECM organization to protein folding and chaperone activity.

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