pGraph: Efficient Parallel Construction of Large-Scale Protein Sequence Homology Graphs

Changjun Wu; Ananth Kalyanaraman; William R. Cannon

doi:10.1109/tpds.2012.19

pGraph: Efficient Parallel Construction of Large-Scale Protein Sequence Homology Graphs

IEEE Transactions on Parallel and Distributed Systems ◽

10.1109/tpds.2012.19 ◽

2012 ◽

Vol 23 (10) ◽

pp. 1923-1933 ◽

Cited By ~ 23

Author(s):

Changjun Wu ◽

Ananth Kalyanaraman ◽

William R. Cannon

Keyword(s):

Sequence Homology ◽

Protein Sequence ◽

Large Scale ◽

Protein Sequence Homology ◽

Parallel Construction

Download Full-text

A Scalable Parallel Algorithm for Large-Scale Protein Sequence Homology Detection

2010 39th International Conference on Parallel Processing ◽

10.1109/icpp.2010.41 ◽

2010 ◽

Cited By ~ 1

Author(s):

Changjun Wu ◽

Ananth Kalyanaraman ◽

William R. Cannon

Keyword(s):

Parallel Algorithm ◽

Sequence Homology ◽

Protein Sequence ◽

Large Scale ◽

Homology Detection ◽

Protein Sequence Homology

Download Full-text

SEQUENCES OF INTEREST: Molecular Cloning of Complementary Deoxyribonucleic Acid for an Androgen-Regulated Epididymal Protein: Sequence Homology with Metalloproteins

Molecular Endocrinology ◽

10.1210/mend-2-10-999 ◽

1988 ◽

Vol 2 (10) ◽

pp. 999-1004 ◽

Cited By ~ 47

Author(s):

Nancy J. Charest ◽

David R. Joseph ◽

Elizabeth M. Wilson ◽

Frank S. French

Keyword(s):

Molecular Cloning ◽

Sequence Homology ◽

Protein Sequence ◽

Deoxyribonucleic Acid ◽

Protein Sequence Homology ◽

Complementary Deoxyribonucleic Acid

Download Full-text

Application of Query-Based Qualitative Descriptors in Conjunction with Protein Sequence Homology for Prediction of Residue Solvent Accessibility

10.31979/etd.em6c-qn2b ◽

2013 ◽

Author(s):

Reecha Nepal

Keyword(s):

Sequence Homology ◽

Protein Sequence ◽

Solvent Accessibility ◽

Protein Sequence Homology

Download Full-text

Human prostatic acid phosphatase: cDNA cloning, gene mapping and protein sequence homology with lysosomal acid phosphatase

Biochemical and Biophysical Research Communications ◽

10.1016/0006-291x(89)91623-9 ◽

1989 ◽

Vol 160 (1) ◽

pp. 79-86 ◽

Cited By ~ 31

Author(s):

Farida S. Sharief ◽

Hansoo Lee ◽

Mary M. Leuderman ◽

Ake Lundwall ◽

Larry L. Deaven ◽

...

Keyword(s):

Acid Phosphatase ◽

Gene Mapping ◽

Cdna Cloning ◽

Sequence Homology ◽

Protein Sequence ◽

Prostatic Acid Phosphatase ◽

Lysosomal Acid ◽

Protein Sequence Homology

Download Full-text

Chlamydia trachomatis60 kDa cysteine rich outer membrane protein: sequence homology between trachoma and LGV biovars

FEMS Microbiology Letters ◽

10.1111/j.1574-6968.1989.tb03676.x ◽

1989 ◽

Vol 65 (3) ◽

pp. 293-297 ◽

Cited By ~ 8

Author(s):

M.W. Watson ◽

P.R. Lambden ◽

M.E. Ward ◽

I.N. Clarke

Keyword(s):

Membrane Protein ◽

Outer Membrane ◽

Outer Membrane Protein ◽

Sequence Homology ◽

Protein Sequence ◽

Protein Sequence Homology

Download Full-text

Variation in Resistance to Benzimidizole in Different Biocontrol Agents Based on Protein Sequence Homology

Protein and Peptide Letters ◽

10.2174/092986607780782821 ◽

2007 ◽

Vol 14 (5) ◽

pp. 461-464

Author(s):

B. Jarullah ◽

R. Subramanian ◽

M. Jummanah

Keyword(s):

Sequence Homology ◽

Protein Sequence ◽

Biocontrol Agents ◽

Protein Sequence Homology

Download Full-text

Cloning of cDNA coding for the beta chain of human complement component C4b-binding protein: sequence homology with the alpha chain.

Proceedings of the National Academy of Sciences ◽

10.1073/pnas.87.3.1183 ◽

1990 ◽

Vol 87 (3) ◽

pp. 1183-1187 ◽

Cited By ~ 63

Author(s):

A. Hillarp ◽

B. Dahlback

Keyword(s):

Sequence Homology ◽

Protein Sequence ◽

Binding Protein ◽

Complement Component ◽

Human Complement ◽

Beta Chain ◽

Alpha Chain ◽

Protein Sequence Homology ◽

Human Complement Component

Download Full-text

Protein sequence homology between plant 4-coumarate: CoA llgase and firefly luciferase

Nucleic Acids Research ◽

10.1093/nar/17.1.460 ◽

1989 ◽

Vol 17 (1) ◽

pp. 460-460 ◽

Cited By ~ 25

Author(s):

Joachim Schröder

Keyword(s):

Sequence Homology ◽

Protein Sequence ◽

Firefly Luciferase ◽

Protein Sequence Homology

Download Full-text

Identification of protein sequence homology by consensus template alignment

Journal of Molecular Biology ◽

10.1016/0022-2836(86)90308-6 ◽

1986 ◽

Vol 188 (2) ◽

pp. 233-258 ◽

Cited By ~ 213

Author(s):

William Ramsay Taylor

Keyword(s):

Sequence Homology ◽

Protein Sequence ◽

Protein Sequence Homology

Download Full-text

Dirichlet mixtures: a method for improved detection of weak but significant protein sequence homology

Bioinformatics ◽

10.1093/bioinformatics/12.4.327 ◽

1996 ◽

Vol 12 (4) ◽

pp. 327-345 ◽

Cited By ~ 55

Author(s):

Kimmen Sjölander ◽

Kevin Karplus ◽

Michael Brown ◽

Richard Hughey ◽

Anders Krogh ◽

...

Keyword(s):

Sequence Homology ◽

Protein Sequence ◽

Dirichlet Mixtures ◽

Protein Sequence Homology

Download Full-text