Mutagenic Primer Design for Mismatch PCR-RFLP SNP Genotyping Using a Genetic Algorithm

Cheng-Hong Yang;  Yu-Huei Cheng;  Cheng-Huei Yang;  Li-Yeh Chuang

doi:10.1109/tcbb.2012.25

Mutagenic Primer Design for Mismatch PCR-RFLP SNP Genotyping Using a Genetic Algorithm

IEEE/ACM Transactions on Computational Biology and Bioinformatics ◽

10.1109/tcbb.2012.25 ◽

2012 ◽

Vol 9 (3) ◽

pp. 837-845 ◽

Cited By ~ 8

Author(s):

Cheng-Hong Yang ◽

Yu-Huei Cheng ◽

Cheng-Huei Yang ◽

Li-Yeh Chuang

Keyword(s):

Genetic Algorithm ◽

Primer Design ◽

Snp Genotyping ◽

Mutagenic Primer ◽

Pcr Rflp

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A mismatch PCR-RFLP primer design for SNP genotyping using genetic algorithm

9th IEEE International Conference on Cognitive Informatics (ICCI'10) ◽

10.1109/coginf.2010.5599752 ◽

2010 ◽

Author(s):

Cheng-Hong Yang ◽

Yu-Huei Cheng ◽

Li-Yeh Chuang ◽

Hsueh-Wei Chang

Keyword(s):

Genetic Algorithm ◽

Primer Design ◽

Snp Genotyping ◽

Pcr Rflp

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A Novel Teaching-Learning-Based Optimization for Improved Mutagenic Primer Design in Mismatch PCR-RFLP SNP Genotyping

IEEE/ACM Transactions on Computational Biology and Bioinformatics ◽

10.1109/tcbb.2015.2430354 ◽

2016 ◽

Vol 13 (1) ◽

pp. 86-98 ◽

Cited By ~ 10

Author(s):

Yu-Huei Cheng

Keyword(s):

Primer Design ◽

Snp Genotyping ◽

Mutagenic Primer ◽

Pcr Rflp ◽

Teaching Learning Based Optimization ◽

Teaching Learning

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Evolutionary Computation-Based Memetic Algorithm Against Genetic Algorithm to Improve PCR-RFLP Assay Primers of SNP Genotyping

IEEE Access ◽

10.1109/access.2018.2884189 ◽

2018 ◽

Vol 6 ◽

pp. 77807-77815

Author(s):

Yu-Huei Cheng ◽

Ching-Ming Lai ◽

Jiashen Teh ◽

Che-Nan Kuo

Keyword(s):

Genetic Algorithm ◽

Evolutionary Computation ◽

Memetic Algorithm ◽

Snp Genotyping ◽

Pcr Rflp ◽

Rflp Assay

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Apply genetic algorithm with an adaptive stopping criterion to PCR-RFLP Primer Design

2012 IEEE 11th International Conference on Cognitive Informatics and Cognitive Computing ◽

10.1109/icci-cc.2012.6311176 ◽

2012 ◽

Author(s):

Yu-Huei Cheng ◽

Li-Yeh Chuang ◽

Cheng-Hong Yang

Keyword(s):

Genetic Algorithm ◽

Primer Design ◽

Stopping Criterion ◽

Apply Genetic ◽

Pcr Rflp

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Effective Natural PCR-RFLP Primer Design for SNP Genotyping Using Teaching-Learning-Based Optimization With Elite Strategy

IEEE Transactions on NanoBioscience ◽

10.1109/tnb.2016.2597867 ◽

2016 ◽

Vol 15 (7) ◽

pp. 657-665 ◽

Cited By ~ 9

Author(s):

Yu-Huei Cheng ◽

Che-Nan Kuo ◽

Ching-Ming Lai

Keyword(s):

Primer Design ◽

Snp Genotyping ◽

Elite Strategy ◽

Pcr Rflp ◽

Teaching Learning Based Optimization ◽

Teaching Learning

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Confronting two-pair primer design for enzyme-free SNP genotyping based on a genetic algorithm

BMC Bioinformatics ◽

10.1186/1471-2105-11-509 ◽

2010 ◽

Vol 11 (1) ◽

pp. 509 ◽

Cited By ~ 15

Author(s):

Cheng-Hong Yang ◽

Yu-Huei Cheng ◽

Li-Yeh Chuang ◽

Hsueh-Wei Chang

Keyword(s):

Genetic Algorithm ◽

Primer Design ◽

Snp Genotyping

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Primer design for multiplex PCR using a genetic algorithm

Proceedings of the 2005 conference on Genetic and evolutionary computation - GECCO '05 ◽

10.1145/1068009.1068087 ◽

2005 ◽

Cited By ~ 1

Author(s):

Feng-Mao Lin ◽

Hsien-Da Huang ◽

His-Yuan Huang ◽

Jorng-Tzong Horng

Keyword(s):

Genetic Algorithm ◽

Multiplex Pcr ◽

Primer Design

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Mutagenic primer-based PCR-RFLP assay for genotyping IRGM gene promoter variant rs4958843 (C/T)

Journal of Clinical Laboratory Analysis ◽

10.1002/jcla.22346 ◽

2017 ◽

Vol 32 (4) ◽

pp. e22346 ◽

Cited By ~ 1

Author(s):

Ambika Sharma ◽

Harish Changotra

Keyword(s):

Gene Promoter ◽

Mutagenic Primer ◽

Pcr Rflp ◽

Rflp Assay

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Primer design for SNP genotyping based on allele-specific amplification—Application to organ transplantation pharmacogenomics

Journal of Pharmaceutical and Biomedical Analysis ◽

10.1016/j.jpba.2016.12.030 ◽

2017 ◽

Vol 136 ◽

pp. 14-21 ◽

Cited By ~ 5

Author(s):

Luis A. Tortajada-Genaro ◽

Rosa Puchades ◽

Ángel Maquieira

Keyword(s):

Organ Transplantation ◽

Primer Design ◽

Snp Genotyping ◽

Allele Specific ◽

Specific Amplification

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Primer design using genetic algorithm

Bioinformatics ◽

10.1093/bioinformatics/bth147 ◽

2004 ◽

Vol 20 (11) ◽

pp. 1710-1717 ◽

Cited By ~ 31

Author(s):

J.-S. Wu ◽

C. Lee ◽

C.-C. Wu ◽

Y.-L. Shiue

Keyword(s):

Genetic Algorithm ◽

Primer Design

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