Topological Analysis and Gaussian Decision Tree: Effective Representation and Classification of Biosignals of Small Sample Size

2017 ◽  
Vol 64 (9) ◽  
pp. 2288-2299 ◽  
Author(s):  
Zhifei Zhang ◽  
Yang Song ◽  
Haochen Cui ◽  
Jayne Wu ◽  
Fernando Schwartz ◽  
...  
Keyword(s):  
Decision Tree ◽  
Sample Size ◽  
Small Sample Size ◽  
Topological Analysis ◽  
Small Sample ◽  
Effective Representation

scholarly journals A Cascade Flexible Neural Forest Model for Cancer Subtypes Classification on Gene Expression Data

2021 ◽  
Vol 2021 ◽  
pp. 1-11
Author(s):  
Lianxin Zhong ◽  
Qingfang Meng ◽  
Yuehui Chen
Keyword(s):  
Gene Expression ◽  
Sample Size ◽  
Gene Expression Data ◽  
Small Sample Size ◽  
Small Sample ◽  
Expression Data ◽  
Cancer Subtypes ◽  
Subtype Classification ◽  
Cancer Subtype

The correct classification of cancer subtypes is of great significance for the in-depth study of cancer pathogenesis and the realization of accurate treatment for cancer patients. In recent years, the classification of cancer subtypes using deep neural networks and gene expression data has become a hot topic. However, most classifiers may face the challenges of overfitting and low classification accuracy when dealing with small sample size and high-dimensional biological data. In this paper, the Cascade Flexible Neural Forest (CFNForest) Model was proposed to accomplish cancer subtype classification. CFNForest extended the traditional flexible neural tree structure to FNT Group Forest exploiting a bagging ensemble strategy and could automatically generate the model’s structure and parameters. In order to deepen the FNT Group Forest without introducing new hyperparameters, the multilayer cascade framework was exploited to design the FNT Group Forest model, which transformed features between levels and improved the performance of the model. The proposed CFNForest model also improved the operational efficiency and the robustness of the model by sample selection mechanism between layers and setting different weights for the output of each layer. To accomplish cancer subtype classification, FNT Group Forest with different feature sets was used to enrich the structural diversity of the model, which make it more suitable for processing small sample size datasets. The experiments on RNA-seq gene expression data showed that CFNForest effectively improves the accuracy of cancer subtype classification. The classification results have good robustness.

scholarly journals Species Identification on a Small Sample Size of RNA Sequences by Combined Method of Noise Filtering with L2-Norm

2011 ◽  
Vol 1 ◽  
pp. 214-220
Author(s):  
Yu Jen Hu ◽  
Yuh Hua Hu ◽  
Jyh Bin Ke ◽  
Tin Chi Kuo ◽  
Ching Ho Yen ◽  
...  
Keyword(s):  
Sample Size ◽  
Species Identification ◽  
Small Sample Size ◽  
Biological Species ◽  
Small Sample ◽  
Rna Sequences ◽  
Distance Method ◽  
Noise Filter ◽  
L2 Norm

This paper proposed a noise filter with L2-norm distance method to design a classification of RNA sequences for the species identification, included of the small sample size of the nucleic acid sequence. This method amended and expanded the study by Hu et al. in 2011 [1]. We verified this method with the biological sample "slipper orchids" and its hybrid for biological species identification test. The result is showed that after applied our method, we can distinguish the paternity of a hybrid among a set of samples of "slipper orchids".

Application of Ultrasound Elastography for Assessing Intestinal Fibrosis in Inflammatory Bowel Disease: Fiction or Reality?

2020 ◽  
Vol 21 ◽  
Author(s):  
Roberto Gabbiadini ◽  
Eirini Zacharopoulou ◽  
Federica Furfaro ◽  
Vincenzo Craviotto ◽  
Alessandra Zilli ◽  
...  
Keyword(s):  
Inflammatory Bowel Disease ◽  
Sample Size ◽  
Bowel Disease ◽  
Small Sample Size ◽  
Shear Wave Elastography ◽  
Small Sample ◽  
Ultrasound Elastography ◽  
Invasive Technique ◽  
Intestinal Fibrosis ◽  
Inflammatory Bowel

Background: Intestinal fibrosis and subsequent strictures represent an important burden in inflammatory bowel disease (IBD). The detection and evaluation of the degree of fibrosis in stricturing Crohn’s disease (CD) is important to address the best therapeutic strategy (medical anti-inflammatory therapy, endoscopic dilation, surgery). Ultrasound elastography (USE) is a non-invasive technique that has been proposed in the field of IBD for evaluating intestinal stiffness as a biomarker of intestinal fibrosis. Objective: The aim of this review is to discuss the ability and current role of ultrasound elastography in the assessment of intestinal fibrosis. Results and Conclusion: Data on USE in IBD are provided by pilot and proof-of-concept studies with small sample size. The first type of USE investigated was strain elastography, while shear wave elastography has been introduced lately. Despite the heterogeneity of the methods of the studies, USE has been proven to be able to assess intestinal fibrosis in patients with stricturing CD. However, before introducing this technique in current practice, further studies with larger sample size and homogeneous parameters, testing reproducibility, and identification of validated cut-off values are needed.

scholarly journals Confirming known planetary trends using a photometrically selected Kepler sample

2020 ◽  
Author(s):  
Jonah T Hansen ◽  
Luca Casagrande ◽  
Michael J Ireland ◽  
Jane Lin
Keyword(s):  
Sample Size ◽  
Robust Statistics ◽  
Narrow Band ◽  
Small Sample Size ◽  
Small Sample ◽  
Fitting Algorithm ◽  
Statistical Studies ◽  
The Rich ◽  
Host Stars ◽  
High Metallicity

Abstract Statistical studies of exoplanets and the properties of their host stars have been critical to informing models of planet formation. Numerous trends have arisen in particular from the rich Kepler dataset, including that exoplanets are more likely to be found around stars with a high metallicity and the presence of a “gap” in the distribution of planetary radii at 1.9 R⊕. Here we present a new analysis on the Kepler field, using the APOGEE spectroscopic survey to build a metallicity calibration based on Gaia, 2MASS and Strömgren photometry. This calibration, along with masses and radii derived from a Bayesian isochrone fitting algorithm, is used to test a number of these trends with unbiased, photometrically derived parameters, albeit with a smaller sample size in comparison to recent studies. We recover that planets are more frequently found around higher metallicity stars; over the entire sample, planetary frequencies are 0.88 ± 0.12 percent for [Fe/H] < 0 and 1.37 ± 0.16 percent for [Fe/H] ≥ 0 but at two sigma we find that the size of exoplanets influences the strength of this trend. We also recover the planet radius gap, along with a slight positive correlation with stellar mass. We conclude that this method shows promise to derive robust statistics of exoplanets. We also remark that spectrophotometry from Gaia DR3 will have an effective resolution similar to narrow band filters and allow to overcome the small sample size inherent in this study.

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