The conditions to determine convolutional network coding on matrix representation

Author(s):  
Ning Cai ◽  
Wangmei Guo
2018 ◽  
Vol 64 (7) ◽  
pp. 5277-5295
Author(s):  
Maxim Lvov ◽  
Haim H. Permuter

2018 ◽  
Author(s):  
Binh Thanh Do ◽  
Vladimir Golkov ◽  
Göktuğ Erce Gürel ◽  
Daniel Cremers

AbstractPrecursor microRNA (pre-miRNA) identification is the basis for identifying microRNAs (miRNAs), which have important roles in post-transcriptional regulation of gene expression. In this paper, we propose a deep learning method to identify whether a small non-coding RNA sequence is a pre-miRNA or not. We outperform state-of-the-art methods on three benchmark datasets, namely the human, cross-species, and new datasets. The key of our method is to use a matrix representation of predicted secondary structure as input to a 2D convolutional network. The neural network extracts optimized features automatically instead of using a large number of handcrafted features as most existing methods do. Code and results are available at https://github.com/peace195/miRNA-identification-conv2D.


Author(s):  
Wangmei Guo ◽  
Wenzhe Zhang ◽  
Wenyue Zhang ◽  
Baoming Bai

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