Generalized maximum likelihood estimates for exponential families

2006 ◽  
Author(s):  
Imre Csiszar ◽  
Frantisek Matus
Keyword(s):  
Maximum Likelihood ◽  
Exponential Families ◽  
Maximum Likelihood Estimates ◽  
Generalized Maximum Likelihood

scholarly journals Risk Efficiencies of Empirical Bayes and Generalized Maximum Likelihood Estimates for Rayleigh Model under Censored Data

2014 ◽  
Vol 2014 ◽  
pp. 1-7
Author(s):  
Dinesh Barot ◽  
Manhar Patel
Keyword(s):  
Maximum Likelihood ◽  
Loss Function ◽  
Empirical Bayes ◽  
Real Data ◽  
Rayleigh Distribution ◽  
Comparison Method ◽  
Maximum Likelihood Estimates ◽  
Data Set ◽  
Bayes Estimates ◽  
Generalized Maximum Likelihood

The comparison of empirical Bayes and generalized maximum likelihood estimates of reliability performances is made in terms of risk efficiencies when the data are progressively Type II censored from Rayleigh distribution. The empirical Bayes estimates are obtained using an asymmetric loss function. The risk functions of the estimates and risk efficiencies are obtained under this loss function. A real data set is presented to illustrate the proposed comparison method, and the performance of the estimates is examined and compared in terms of risk efficiencies by means of Monte Carlo simulations. The simulation results indicate that the proposed empirical Bayes estimates are more preferable than the generalized maximum likelihood estimates.

scholarly journals Directional Selection and the Site-Frequency Spectrum

Genetics ◽  
2001 ◽  
Vol 159 (4) ◽  
pp. 1779-1788 ◽  
Author(s):  
Carlos D Bustamante ◽  
John Wakeley ◽  
Stanley Sawyer ◽  
Daniel L Hartl
Keyword(s):  
Maximum Likelihood ◽  
High Power ◽  
Negative Selection ◽  
Likelihood Estimation ◽  
Directional Selection ◽  
Likelihood Ratio Tests ◽  
Maximum Likelihood Estimates ◽  
Likelihood Methods ◽  
Ancestral States ◽  
Asymptotic Variances

Abstract In this article we explore statistical properties of the maximum-likelihood estimates (MLEs) of the selection and mutation parameters in a Poisson random field population genetics model of directional selection at DNA sites. We derive the asymptotic variances and covariance of the MLEs and explore the power of the likelihood ratio tests (LRT) of neutrality for varying levels of mutation and selection as well as the robustness of the LRT to deviations from the assumption of free recombination among sites. We also discuss the coverage of confidence intervals on the basis of two standard-likelihood methods. We find that the LRT has high power to detect deviations from neutrality and that the maximum-likelihood estimation performs very well when the ancestral states of all mutations in the sample are known. When the ancestral states are not known, the test has high power to detect deviations from neutrality for negative selection but not for positive selection. We also find that the LRT is not robust to deviations from the assumption of independence among sites.

scholarly journals An Integrated Framework for the Inference of Viral Population History From Reconstructed Genealogies

Genetics ◽  
2000 ◽  
Vol 155 (3) ◽  
pp. 1429-1437
Author(s):  
Oliver G Pybus ◽  
Andrew Rambaut ◽  
Paul H Harvey
Keyword(s):  
Maximum Likelihood ◽  
Sequence Data ◽  
Demographic History ◽  
Population History ◽  
Maximum Likelihood Estimates ◽  
Viral Population ◽  
True Parameter ◽  
Subtype B ◽  
Exponential Growth Model ◽  
Parameter Values

Abstract We describe a unified set of methods for the inference of demographic history using genealogies reconstructed from gene sequence data. We introduce the skyline plot, a graphical, nonparametric estimate of demographic history. We discuss both maximum-likelihood parameter estimation and demographic hypothesis testing. Simulations are carried out to investigate the statistical properties of maximum-likelihood estimates of demographic parameters. The simulations reveal that (i) the performance of exponential growth model estimates is determined by a simple function of the true parameter values and (ii) under some conditions, estimates from reconstructed trees perform as well as estimates from perfect trees. We apply our methods to HIV-1 sequence data and find strong evidence that subtypes A and B have different demographic histories. We also provide the first (albeit tentative) genetic evidence for a recent decrease in the growth rate of subtype B.

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