scholarly journals Knowledge extraction from web-based application source code: An approach to database reverse engineering for ontology development

2008 ◽  
Author(s):  
Shuxin Zhao ◽  
Elizabeth Chang ◽  
Tharam Dillon
Keyword(s):  
Reverse Engineering ◽  
Source Code ◽  
Knowledge Extraction ◽  
Ontology Development ◽  
Web Based

scholarly journals BUSINESS KNOWLEDGE EXTRACTION FROM LEGACY INFORMATION SYSTEMS

2006 ◽  
Vol 35 (3) ◽  
Author(s):  
Bronius Paradauskas ◽  
Aurimas Laurikaitis
Keyword(s):  
Information System ◽  
Information Systems ◽  
Reverse Engineering ◽  
Relational Database ◽  
Source Code ◽  
Knowledge Extraction ◽  
Legacy Systems ◽  
Program Understanding ◽  
Business Knowledge ◽  
Legacy Information Systems

This article discusses the process of enterprise knowledge extraction from relational database and source code of legacy information systems. Problems of legacy systems and main solutions for them are briefly described here. The uses of data reverse engineering and program understanding techniques to automatically infer as much as possible the schema and semantics of a legacy information system is analyzed. Eight step data reverse engineering algorithm for knowledge extraction from legacy systems is provided. A hypothetical example of knowledge extraction from legacy information system is presented.

SISTEM INFORMASI MANAJEMEN PENGARSIPAN BERBASIS FRAMEWORK CODE IGNITER UNTUK MENTERTIBKAN PELAYANAN SURAT MENYURAT

2019 ◽  
Vol 2 (1) ◽  
pp. 1-16
Author(s):  
Nana Suarna
Keyword(s):  
Source Code ◽  
Web Based

Seiring waktu, jumlah surat dalam sebuah perusahaan semakin hari makin banyak, sehingga muncul permasalahan dalam mengelolanya administrasi suarat, baik ketika dalam pencatatan surat maupun proses disposisi, serta pada saat pencarian arsip surat. Hampir sebagai besar surat yang ada di kantor-kantor masih disimpan dalam bentuk file-file yang masih bersifat manual, sehingga memungkinkan surat tersebut menunpuk, dan memerlukan waktu yang lama dalam pencarian dan pemrosesannya. Dengan dibangunnya  sistem manajemen pengarsipan bertujuan untuk mengatasi permasalahan-permasalahan tersebut di atas. Pemrograman  saat ini, baik desktop maupun web based, semakin marak  pengerjaannya menggunakan framework code igniter berbasis PHP. Framework CI memang dikembangkan untuk memudahkan dalam developing aplikasi dengan struktur  file source code-nya menggunakan pendekatan Models-Views-Controller (MVC) dan pemrograman berorientasi objek, oleh sebab itu penulis menggunakan CI dalam developing aplikasi ini. Aplikasi sistem manajemen surat dan pengarsipan ini dapat diakses dalam internal perusahaan web, yang bertujuan untuk memudahkan karyawan  dalam pengelolaan dan  mengaksesnya surat menyurat, selain itu aplikasi ini juga memberikan kemudahan dalam proses pencatatan surat,  disposisi, dan proses pencarian sehingga aplikasisi ini memiliki performa yang handal, mudah untuk di-maintenance dan dikembangkan lebih lanjut seiring perkembangan kebutuhan penggunanya.

scholarly journals Viral Host Range database, an online tool for recording, analyzing and disseminating virus-host interactions

2021 ◽  
Author(s):  
Quentin Lamy-Besnier ◽  
Bryan Brancotte ◽  
Hervé Ménager ◽  
Laurent Debarbieux
Keyword(s):  
Host Range ◽  
Source Code ◽  
Range Data ◽  
Web Based ◽  
Online Tool ◽  
Experimental Host ◽  
Living World ◽  
Host Interactions ◽  
Experimental Host Range ◽  
Viral Host Range

Abstract Motivation Viruses are ubiquitous in the living world, and their ability to infect more than one host defines their host range. However, information about which virus infects which host, and about which host is infected by which virus, is not readily available. Results We developed a web-based tool called the Viral Host Range database to record, analyze and disseminate experimental host range data for viruses infecting archaea, bacteria and eukaryotes. Availability The ViralHostRangeDB application is available from https://viralhostrangedb.pasteur.cloud. Its source code is freely available from the Gitlab hub of Institut Pasteur (https://gitlab.pasteur.fr/hub/viralhostrangedb).

Program Mining Augmented with Empirical Properties

2011 ◽  
pp. 1610-1616
Author(s):  
Minh Ngoc Ngo
Keyword(s):  
Data Mining ◽  
Software Engineering ◽  
Reverse Engineering ◽  
Source Code ◽  
Close Similarity ◽  
Legacy Systems ◽  
Software Structure ◽  
Program Mining ◽  
Invariant Properties ◽  
To Receive

Due to the need to reengineer and migrating aging software and legacy systems, reverse engineering has started to receive some attention. It has now been established as an area in software engineering to understand the software structure, to recover or extract design and features from programs mainly from source code. The inference of design and feature from codes has close similarity with data mining that extracts and infers information from data. In view of their similarity, reverse engineering from program codes can be called as program mining. Traditionally, the latter has been mainly based on invariant properties and heuristics rules. Recently, empirical properties have been introduced to augment the existing methods. This article summarizes some of the work in this area.

scholarly journals HD-eXplosion: visualization of hydrogen–deuterium exchange data as chiclet and volcano plots with statistical filtering

2020 ◽  
Author(s):  
Naifu Zhang ◽  
Xiaohe Yu ◽  
Xinchao Zhang ◽  
Sheena D’Arcy
Keyword(s):  
Source Code ◽  
Deuterium Exchange ◽  
Hydrogen Deuterium Exchange ◽  
Web Based ◽  
Data Presentation ◽  
Software Packages ◽  
Volcano Plots ◽  
Hydrogen Deuterium ◽  
Exchange Data ◽  
Publication Quality

Abstract Summary Hydrogen–Deuterium eXchange coupled to mass spectrometry is a powerful tool for the analysis of protein dynamics and interactions. Bottom-up experiments looking at deuterium uptake differences between various conditions are the most common. These produce multi-dimensional data that can be challenging to depict in a single visual format. Each user must also set significance thresholds to define meaningful differences and make these apparent in data presentation. To assist in this process, we have created HD-eXplosion, an open-source, web-based application for the generation of chiclet and volcano plots with statistical filters. HD-eXplosion fills a void in available software packages and produces customizable plots that are publication quality. Availability and implementation The HD-eXplosion application is available at http://hd-explosion.utdallas.edu. The source code can be found at https://github.com/HD-Explosion.

scholarly journals A fully computational and reasonable representation for karyotypes

2019 ◽  
Vol 35 (24) ◽  
pp. 5264-5270
Author(s):  
Jennifer D Warrender ◽  
Anthony V Moorman ◽  
Phillip Lord
Keyword(s):  
Source Code ◽  
Significant Advance ◽  
Ontology Development ◽  
Development Environment ◽  
Tawny Owl ◽  
Causes Of Disease ◽  
Search Data ◽  
Computational Representation

Abstract Summary The human karyotype has been used as a mechanism for describing and detecting gross abnormalities in the genome for many decades. It is used both for routine diagnostic purposes and for research to further our understanding of the causes of disease. Despite these important applications there has been no rigorous computational representation of the karyotype; rather an informal, string-based representation is used, making it hard to check, organize and search data of this form. In this article, we describe our use of OWL, the Ontology Web Language, to generate a fully computational representation of the karyotype; the development of this ontology represents a significant advance from the traditional bioinformatics use for tagging and navigation and has necessitated the development of a new ontology development environment called Tawny-OWL. Availability and implementation The Karyotype Ontology and associated Tawny-OWL source code is available on GitHub at https://github.com/jaydchan/tawny-karyotype, under a LGPL License, Version 3.0.

scholarly journals A Model Driven Reverse Engineering Framework for Generating High Level UML Models From Java Source Code

IEEE Access ◽  
2019 ◽  
Vol 7 ◽  
pp. 158931-158950 ◽  
Author(s):  
Umair Sabir ◽  
Farooque Azam ◽  
Sami Ul Haq ◽  
Muhammad Waseem Anwar ◽  
Wasi Haider Butt ◽  
...  
Keyword(s):  
Reverse Engineering ◽  
Source Code ◽  
Model Driven ◽  
High Level ◽  
Uml Models

scholarly journals INDRA-IPM: interactive pathway modeling using natural language with automated assembly

2019 ◽  
Vol 35 (21) ◽  
pp. 4501-4503 ◽  
Author(s):  
Petar V Todorov ◽  
Benjamin M Gyori ◽  
John A Bachman ◽  
Peter K Sorger
Keyword(s):  
Natural Language Processing ◽  
Natural Language ◽  
Web Service ◽  
Language Processing ◽  
Source Code ◽  
Supplementary Information ◽  
Expression Data ◽  
Supplementary Data ◽  
Automated Assembly ◽  
Web Based

Abstract Summary INDRA-IPM (Interactive Pathway Map) is a web-based pathway map modeling tool that combines natural language processing with automated model assembly and visualization. INDRA-IPM contextualizes models with expression data and exports them to standard formats. Availability and implementation INDRA-IPM is available at: http://pathwaymap.indra.bio. Source code is available at http://github.com/sorgerlab/indra_pathway_map. The underlying web service API is available at http://api.indra.bio:8000. Supplementary information Supplementary data are available at Bioinformatics online.

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