RNAVLab: A unified environment for computational RNA structure analysis based on grid computing technology

2007 ◽  
Author(s):  
M. Taufer ◽  
M.-Y. Leung ◽  
K. L. Johnson ◽  
A. Licon
Keyword(s):  
Grid Computing ◽  
Structure Analysis ◽  
Rna Structure ◽  
Computing Technology

A Review Paper on Cloud Computing

2018 ◽  
Vol 8 (6) ◽  
pp. 17 ◽  
Author(s):  
Priyanshu Srivastava ◽  
Rizwan Khan
Keyword(s):  
Cloud Computing ◽  
Grid Computing ◽  
Review Paper ◽  
Computing Technology ◽  
Internet Infrastructure ◽  
Before And After ◽  
The Face

Today is the era of Cloud Computing Technology in IT Industries. Cloud computing which is based on Internet has the most powerful architecture of computation. It reckons in of a compilation of integrated and networked hardware, software and internet infrastructure. It has various avails atop grid computing and other computing. In this paper, I have given a brief of evaluation of cloud computing by reviewing more than 30 articles on cloud computing. The outcome of this review signalizes the face of the IT industries before and after the cloud computing.

On utilization of the grid computing technology for video conversion and 3D rendering

2010 ◽  
Vol 32 (1-2) ◽  
pp. 29-37
Author(s):  
Chao-Tung Yang ◽  
Wen-Chung Shih ◽  
Ching-Hsien Hsu
Keyword(s):  
Grid Computing ◽  
Computing Technology ◽  
3D Rendering

scholarly journals Grid computing technology for hydrological applications

2011 ◽  
Vol 403 (1-2) ◽  
pp. 186-199 ◽  
Author(s):  
G. Lecca ◽  
M. Petitdidier ◽  
L. Hluchy ◽  
M. Ivanovic ◽  
N. Kussul ◽  
...  
Keyword(s):  
Grid Computing ◽  
Computing Technology ◽  
Hydrological Applications

scholarly journals Viral RNA structure analysis using DMS-MaPseq

Methods ◽  
2020 ◽  
Vol 183 ◽  
pp. 68-75 ◽  
Author(s):  
Phillip Tomezsko ◽  
Harish Swaminathan ◽  
Silvi Rouskin
Keyword(s):  
Structure Analysis ◽  
Rna Structure ◽  
Viral Rna

RNA Structure Analysis by Chemical Probing with DMS and CMCT

2019 ◽  
pp. 209-223
Author(s):  
José M. Andrade ◽  
Ricardo F. dos Santos ◽  
Cecília M. Arraiano
Keyword(s):  
Structure Analysis ◽  
Rna Structure ◽  
Chemical Probing

scholarly journals Large-Scale in Vitro Transcription, RNA Purification and Chemical Probing Analysis

2018 ◽  
Vol 48 (5) ◽  
pp. 1915-1927 ◽  
Author(s):  
Fariha Kanwal ◽  
Ting Chen ◽  
Yunlon Zhang ◽  
Altaf Simair ◽  
Cai Rujie ◽  
...  
Keyword(s):  
Structure Analysis ◽  
Rna Structure ◽  
In Vitro Transcription ◽  
Size Exclusion ◽  
Nucleoside Triphosphate ◽  
Separation Procedure ◽  
Rna Purification ◽  
Chemical Probing ◽  
Rna Interaction

Background/Aims: RNA elements such as catalytic RNA, riboswitch, microRNA, and long non coding RNA (lncRNA) play central roles in many cellular processes. Studying diverse RNA functions require large quantities of RNA for precise structure analysis. Current RNA structure and function studies can benefit from improved RNA quantity and quality, simpler separation procedure and enhanced accuracy of structural analysis. Methods: Here we present an optimized protocol for analyzing the structure of any RNA, including in vitro transcription, size-exclusion chromatography (SEC) based denaturing purification and improved secondary structure analysis by chemical probing. Results: We observed that higher Mg2+, nucleoside triphosphate (NTP) concentrations and longer reaction duration can improve the RNA yield from in vitro transcription, specifically for longer and more complicated constructs. Our improved SEC-based denaturing RNA purification effectively halved the experiment duration and labor without introducing any contaminant. Finally, this study increased the accuracy and signal-to-noise ratio (SNR) of selective 2′-hydroxyl acylation analyzed by primer extension (SHAPE) chemical probing for analyzing RNA structure. Conclusion: Part or all of our modified method can improve almost any RNA-related study from protein-RNA interaction analysis to crystallography.

scholarly journals RNA structure analysis of human spliceosomes reveals a compact 3D arrangement of snRNAs at the catalytic core

2013 ◽  
Vol 32 (21) ◽  
pp. 2804-2818 ◽  
Author(s):  
Maria Anokhina ◽  
Sergey Bessonov ◽  
Zhichao Miao ◽  
Eric Westhof ◽  
Klaus Hartmuth ◽  
...  
Keyword(s):  
Structure Analysis ◽  
Rna Structure ◽  
Catalytic Core

scholarly journals Grid computing and e-science: a view from inside

2008 ◽  
Vol 07 (02) ◽  
pp. C03
Author(s):  
Stefano Cozzini
Keyword(s):  
Cloud Computing ◽  
Grid Computing ◽  
Research Methods ◽  
New Method ◽  
Computing Technology ◽  
Scientific Communities ◽  
Future Evolution ◽  
The World ◽  
The Future

My intention is to analyze how, where and if grid computing technology is truly enabling a new way of doing science (so-called ‘e-science’). I will base my views on the experiences accumulated thus far in a number of scientific communities, which we have provided with the opportunity of using grid computing. I shall first define some basic terms and concepts and then discuss a number of specific cases in which the use of grid computing has actually made possible a new method for doing science. I will then present a case in which this did not result in a change in research methods. I will try to identify the reasons for these failures and analyze the future evolution of grid computing. I will conclude by introducing and commenting the concept of ‘cloud computing’, the approach offered and provided by major industrial actors (Google/IBM and Amazon being among the most important) and what impact this technology might have on the world of research.

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