Detection of differentially expressed genes using feature selection approach from RNA-seq

2017 ◽  
Author(s):  
Yongjun Piao ◽  
Keun Ho Ryu
Keyword(s):  
Feature Selection ◽  
Differentially Expressed Genes ◽  
Differentially Expressed ◽  
Rna Seq ◽  
Selection Approach ◽  
Feature Selection Approach

scholarly journals An Ensemble Feature Selection Approach to Identify Relevant Features from EEG Signals

2021 ◽  
Vol 11 (15) ◽  
pp. 6983
Author(s):  
Maritza Mera-Gaona ◽  
Diego M. López ◽  
Rubiel Vargas-Canas
Keyword(s):  
Feature Selection ◽  
Sensitivity And Specificity ◽  
Eeg Signals ◽  
Specificity And Sensitivity ◽  
Selection Approach ◽  
Feature Selection Approach ◽  
The Stability ◽  
Selection Algorithms ◽  
Epileptiform Events

Identifying relevant data to support the automatic analysis of electroencephalograms (EEG) has become a challenge. Although there are many proposals to support the diagnosis of neurological pathologies, the current challenge is to improve the reliability of the tools to classify or detect abnormalities. In this study, we used an ensemble feature selection approach to integrate the advantages of several feature selection algorithms to improve the identification of the characteristics with high power of differentiation in the classification of normal and abnormal EEG signals. Discrimination was evaluated using several classifiers, i.e., decision tree, logistic regression, random forest, and Support Vecctor Machine (SVM); furthermore, performance was assessed by accuracy, specificity, and sensitivity metrics. The evaluation results showed that Ensemble Feature Selection (EFS) is a helpful tool to select relevant features from the EEGs. Thus, the stability calculated for the EFS method proposed was almost perfect in most of the cases evaluated. Moreover, the assessed classifiers evidenced that the models improved in performance when trained with the EFS approach’s features. In addition, the classifier of epileptiform events built using the features selected by the EFS method achieved an accuracy, sensitivity, and specificity of 97.64%, 96.78%, and 97.95%, respectively; finally, the stability of the EFS method evidenced a reliable subset of relevant features. Moreover, the accuracy, sensitivity, and specificity of the EEG detector are equal to or greater than the values reported in the literature.

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