Phylogenomic Synteny Network Analysis of MADS-Box Transcription Factor Genes Reveals Lineage-Specific Transpositions, Ancient Tandem Duplications, and Deep Positional Conservation

Tao Zhao; Rens Holmer; Suzanne de Bruijn; Gerco C. Angenent; Harrold A. van den Burg; M. Eric Schranz

doi:10.1105/tpc.17.00312

Phylogenomic Synteny Network Analysis of MADS-Box Transcription Factor Genes Reveals Lineage-Specific Transpositions, Ancient Tandem Duplications, and Deep Positional Conservation

The Plant Cell ◽

10.1105/tpc.17.00312 ◽

2017 ◽

Vol 29 (6) ◽

pp. 1278-1292 ◽

Cited By ~ 38

Author(s):

Tao Zhao ◽

Rens Holmer ◽

Suzanne de Bruijn ◽

Gerco C. Angenent ◽

Harrold A. van den Burg ◽

...

Keyword(s):

Transcription Factor ◽

Network Analysis ◽

Mads Box ◽

Positional Conservation ◽

Transcription Factor Genes ◽

Tandem Duplications

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Deregulation of MADS-box transcription factor genes in a mutant defective in the WUSCHEL-LIKE HOMEOBOX gene EVERGREEN of Petunia hybrida

Plant Signaling & Behavior ◽

10.1080/15592324.2018.1471299 ◽

2018 ◽

Vol 13 (6) ◽

pp. e1471299

Author(s):

M. Schorderet ◽

R. R. Duvvuru Muni ◽

A. Fiebig ◽

Didier Reinhardt

Keyword(s):

Transcription Factor ◽

Petunia Hybrida ◽

Homeobox Gene ◽

Mads Box ◽

Transcription Factor Genes

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Faculty of 1000 evaluation for An Arabidopsis mutation in translation elongation factor 2 causes superinduction of CBF/DREB1 transcription factor genes but blocks the induction of their downstream targets under low temperatures.

F1000 - Post-publication peer review of the biomedical literature ◽

10.3410/f.1006316.78957 ◽

2002 ◽

Author(s):

Michael Thomashow

Keyword(s):

Transcription Factor ◽

Low Temperatures ◽

Elongation Factor ◽

Translation Elongation Factor ◽

Translation Elongation ◽

Downstream Targets ◽

Elongation Factor 2 ◽

Transcription Factor Genes

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Faculty Opinions recommendation of Recurrent fusion of TMPRSS2 and ETS transcription factor genes in prostate cancer.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1119.458606 ◽

2005 ◽

Author(s):

Andrew Arnold

Keyword(s):

Prostate Cancer ◽

Transcription Factor ◽

Transcription Factor Genes ◽

Ets Transcription Factor

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A MADS-Box Transcription Factor Related to Fertility Conversion in Male Sterile Wheat Lines

ACTA AGRONOMICA SINICA ◽

10.3724/sp.j.1006.2008.00598 ◽

2008 ◽

Vol 34 (4) ◽

pp. 598-604 ◽

Cited By ~ 3

Author(s):

Lin-Lin ZHOU

Keyword(s):

Transcription Factor ◽

Mads Box ◽

Male Sterile ◽

Wheat Lines

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Expression and Co-expression Analyses of WRKY, MYB, bHLH and bZIP Transcription Factor Genes in Potato (Solanum tuberosum) Under Abiotic Stress Conditions: RNA-seq Data Analysis

Potato Research ◽

10.1007/s11540-021-09502-3 ◽

2021 ◽

Author(s):

Ertugrul Filiz ◽

Firat Kurt

Keyword(s):

Transcription Factor ◽

Abiotic Stress ◽

Solanum Tuberosum ◽

Data Analysis ◽

Stress Conditions ◽

Bzip Transcription Factor ◽

Rna Seq ◽

Transcription Factor Genes

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Gene network analysis using SWIM reveals interplay between the transcription factor‐encoding genes HMGA1, FOXM1, and MYBL2 in triple‐negative breast cancer

FEBS Letters ◽

10.1002/1873-3468.14085 ◽

2021 ◽

Author(s):

Giulia Fiscon ◽

Silvia Pegoraro ◽

Federica Conte ◽

Guidalberto Manfioletti ◽

Paola Paci

Keyword(s):

Breast Cancer ◽

Transcription Factor ◽

Network Analysis ◽

Triple Negative Breast Cancer ◽

Gene Network ◽

Triple Negative ◽

Gene Network Analysis ◽

Encoding Genes

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Identification of Transcription Factor Genes and Their Correlation with the High Diversity of Stramenopiles

PLoS ONE ◽

10.1371/journal.pone.0111841 ◽

2014 ◽

Vol 9 (11) ◽

pp. e111841 ◽

Cited By ~ 6

Author(s):

Francisco Javier Buitrago-Flórez ◽

Silvia Restrepo ◽

Diego Mauricio Riaño-Pachón

Keyword(s):

Transcription Factor ◽

Transcription Factor Genes ◽

High Diversity

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Genome-wide identification and expression analysis of the MADS-box transcription factor family in Camellia sinensis

Journal of Applied Genetics ◽

10.1007/s13353-021-00621-8 ◽

2021 ◽

Vol 62 (2) ◽

pp. 249-264

Author(s):

Zai-Bao Zhang ◽

Yuan-Jin Jin ◽

Hou-Hong Wan ◽

Lin Cheng ◽

Zhi-Guo Feng

Keyword(s):

Transcription Factor ◽

Expression Analysis ◽

Camellia Sinensis ◽

Mads Box ◽

Transcription Factor Family ◽

Genome Wide

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The MADS-box transcription factor GlMADS1 regulates secondary metabolism in Ganoderma lucidum

Mycologia ◽

10.1080/00275514.2020.1810515 ◽

2020 ◽

pp. 1-8

Author(s):

Li Meng ◽

Shaoyan Zhang ◽

Bingzhi Chen ◽

Xiaoran Bai ◽

Yefan Li ◽

...

Keyword(s):

Transcription Factor ◽

Secondary Metabolism ◽

Ganoderma Lucidum ◽

Mads Box

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The Aspergillus niger MADS-box transcription factor RlmA is required for cell wall reinforcement in response to cell wall stress

Molecular Microbiology ◽

10.1111/j.1365-2958.2005.04827.x ◽

2005 ◽

Vol 58 (1) ◽

pp. 305-319 ◽

Cited By ~ 59

Author(s):

Robbert A. Damveld ◽

Mark Arentshorst ◽

Angelique Franken ◽

Patricia A. VanKuyk ◽

Frans M. Klis ◽

...

Keyword(s):

Cell Wall ◽

Transcription Factor ◽

Aspergillus Niger ◽

Wall Stress ◽

Mads Box ◽

Cell Wall Stress ◽

Cell Wall Reinforcement

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