scholarly journals The Conserved Splicing Factor SUA Controls Alternative Splicing of the Developmental Regulator ABI3 in Arabidopsis

2010 ◽  
Vol 22 (6) ◽  
pp. 1936-1946 ◽  
Author(s):  
Matteo Sugliani ◽  
Vittoria Brambilla ◽  
Emile J.M. Clerkx ◽  
Maarten Koornneef ◽  
Wim J.J. Soppe
RNA ◽  
2007 ◽  
Vol 13 (11) ◽  
pp. 1988-1999 ◽  
Author(s):  
M. Alberstein ◽  
M. Amit ◽  
K. Vaknin ◽  
A. O'Donnell ◽  
C. Farhy ◽  
...  

2010 ◽  
Vol 39 (6) ◽  
pp. 925-938 ◽  
Author(s):  
Vidisha Tripathi ◽  
Jonathan D. Ellis ◽  
Zhen Shen ◽  
David Y. Song ◽  
Qun Pan ◽  
...  

2018 ◽  
Vol Volume 11 ◽  
pp. 6049-6056 ◽  
Author(s):  
Stefania Gallo ◽  
Maria Vittoria Arcidiacono ◽  
Veronica Tisato ◽  
Roberta Piva ◽  
Letizia Penolazzi ◽  
...  

2019 ◽  
Vol 28 (16) ◽  
pp. 2763-2774 ◽  
Author(s):  
Nicola Jeffery ◽  
Sarah Richardson ◽  
David Chambers ◽  
Noel G Morgan ◽  
Lorna W Harries

Abstract Changes to islet cell identity in response to type 2 diabetes (T2D) have been reported in rodent models, but are less well characterized in humans. We assessed the effects of aspects of the diabetic microenvironment on hormone staining, total gene expression, splicing regulation and the alternative splicing patterns of key genes in EndoC-βH1 human beta cells. Genes encoding islet hormones [somatostatin (SST), insulin (INS), Glucagon (GCG)], differentiation markers [Forkhead box O1 (FOXO1), Paired box 6, SRY box 9, NK6 Homeobox 1, NK6 Homeobox 2] and cell stress markers (DNA damage inducible transcript 3, FOXO1) were dysregulated in stressed EndoC-βH1 cells, as were some serine arginine rich splicing factor splicing activator and heterogeneous ribonucleoprotein particle inhibitor genes. Whole transcriptome analysis of primary T2D islets and matched controls demonstrated dysregulated splicing for ~25% of splicing events, of which genes themselves involved in messenger ribonucleic acid processing and regulation of gene expression comprised the largest group. Approximately 5% of EndoC-βH1 cells exposed to these factors gained SST positivity in vitro. An increased area of SST staining was also observed ex vivo in pancreas sections recovered at autopsy from donors with type 1 diabetes (T1D) or T2D (9.3% for T1D and 3% for T2D, respectively compared with 1% in controls). Removal of the stressful stimulus or treatment with the AKT Serine/Threonine kinase inhibitor SH-6 restored splicing factor expression and reversed both hormone staining effects and patterns of gene expression. This suggests that reversible changes in hormone expression may occur during exposure to diabetomimetic cellular stressors, which may be mediated by changes in splicing regulation.


Gene ◽  
1998 ◽  
Vol 211 (1) ◽  
pp. 29-37 ◽  
Author(s):  
Angela Krämer ◽  
Mireille Quentin ◽  
Frank Mulhauser

2020 ◽  
Vol 11 ◽  
Author(s):  
Keh Chien Lee ◽  
Kyung Sook Chung ◽  
Hee Tae Lee ◽  
Jae-Hyeok Park ◽  
Jeong Hwan Lee ◽  
...  

Small changes in temperature affect plant ecological and physiological factors that impact agricultural production. Hence, understanding how temperature affects flowering is crucial for decreasing the effects of climate change on crop yields. Recent reports have shown that FLM-β, the major spliced isoform of FLOWERING LOCUS M (FLM)—a flowering time gene, contributes to temperature-responsive flowering in Arabidopsis thaliana. However, the molecular mechanism linking pre-mRNA processing and temperature-responsive flowering is not well understood. Genetic and molecular analyses identified the role of an Arabidopsis splicing factor SF1 homolog, AtSF1, in regulating temperature-responsive flowering. The loss-of-function AtSF1 mutant shows temperature insensitivity at different temperatures and very low levels of FLM-β transcript, but a significantly increased transcript level of the alternative splicing (AS) isoform, FLM-δ. An RNA immunoprecipitation (RIP) assay revealed that AtSF1 is responsible for ambient temperature-dependent AS of FLM pre-mRNA, resulting in the temperature-dependent production of functional FLM-β transcripts. Moreover, alterations in other splicing factors such as ABA HYPERSENSITIVE1/CBP80 (ABH1/CBP80) and STABILIZED1 (STA1) did not impact the FLM-β/FLM-δ ratio at different temperatures. Taken together, our data suggest that a temperature-dependent interaction between AtSF1 and FLM pre-mRNA controls flowering time in response to temperature fluctuations.


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