scholarly journals Genome-Wide Association Mapping and Genomic Prediction Elucidate the Genetic Architecture of Morphological Traits in Arabidopsis

2016 ◽  
Vol 170 (4) ◽  
pp. 2187-2203 ◽  
Author(s):  
Rik Kooke ◽  
Willem Kruijer ◽  
Ralph Bours ◽  
Frank Becker ◽  
André Kuhn ◽  
...  
Keyword(s):  
Association Mapping ◽  
Genomic Prediction ◽  
Morphological Traits ◽  
Genetic Architecture ◽  
Genome Wide Association ◽  
Genome Wide

Genome-wide association mapping and genomic prediction of yield-related traits and starch pasting properties in cassava

2021 ◽  
Author(s):  
Chalermpol Phumichai ◽  
Pornsak Aiemnaka ◽  
Piyaporn Nathaisong ◽  
Sirikan Hunsawattanakul ◽  
Phasakorn Fungfoo ◽  
...  
Keyword(s):  
Association Mapping ◽  
Genomic Prediction ◽  
Pasting Properties ◽  
Genome Wide Association ◽  
Genome Wide

scholarly journals Genetic architecture of plant stress resistance: multi-trait genome-wide association mapping

2016 ◽  
Vol 213 (3) ◽  
pp. 1346-1362 ◽  
Author(s):  
Manus P. M. Thoen ◽  
Nelson H. Davila Olivas ◽  
Karen J. Kloth ◽  
Silvia Coolen ◽  
Ping-Ping Huang ◽  
...  
Keyword(s):  
Association Mapping ◽  
Stress Resistance ◽  
Genetic Architecture ◽  
Plant Stress ◽  
Genome Wide Association ◽  
Genome Wide

scholarly journals Genome-wide association mapping and genomic prediction unravels CBSD resistance in a Manihot esculenta breeding population

2017 ◽  
Author(s):  
Siraj Ismail Kayondo ◽  
Dunia Pino Del Carpio ◽  
Roberto Lozano ◽  
Alfred Ozimati ◽  
Marnin Wolfe ◽  
...  
Keyword(s):  
Association Mapping ◽  
Genomic Prediction ◽  
Manihot Esculenta ◽  
Prediction Models ◽  
Genome Wide Association ◽  
Cassava Mosaic Disease ◽  
Growth Stages ◽  
Chromosome 11 ◽  
Genome Wide ◽  
Severity Scores

AbstractCassava (Manihot esculenta Crantz), a key carbohydrate dietary source for millions of people in Africa, faces severe yield loses due to two viral diseases: cassava brown streak disease (CBSD) and cassava mosaic disease (CMD). The completion of the cassava genome sequence and the whole genome marker profiling of clones from African breeding programs (www.nextgencassava.org) provides cassava breeders the opportunity to deploy additional breeding strategies and develop superior varieties with both farmer and industry preferred traits. Here the identification of genomic segments associated with resistance to CBSD foliar symptoms and root necrosis as measured in two breeding panels at different growth stages and locations is reported. Using genome-wide association mapping and genomic prediction models we describe the genetic architecture for CBSD severity and identify loci strongly associated on chromosomes 4 and 11. Moreover, the significantly associated region on chromosome 4 colocalises with a Manihot glaziovii introgression segment and the significant SNP markers on chromosome 11 are situated within a cluster of nucleotide-binding site leucine-rich repeat (NBS-LRR) genes previously described in cassava. Overall, predictive accuracy values found in this study varied between CBSD severity traits and across GS models with Random Forest and RKHS showing the highest predictive accuracies for foliar and root CBSD severity scores.

scholarly journals Dissecting the genetic architecture of seed-cotton and lint yields in Upland cotton using genome-wide association mapping

2019 ◽  
Vol 69 (4) ◽  
pp. 611-620
Author(s):  
Yuanyuan Wang ◽  
Guirong Li ◽  
Xinlei Guo ◽  
Runrun Sun ◽  
Tao Dong ◽  
...  
Keyword(s):  
Association Mapping ◽  
Upland Cotton ◽  
Genetic Architecture ◽  
Genome Wide Association ◽  
Seed Cotton ◽  
Genome Wide

scholarly journals Genome-wide association mapping and genomic prediction for CBSD resistance in Manihot esculenta

2018 ◽  
Vol 8 (1) ◽  
Author(s):  
Siraj Ismail Kayondo ◽  
Dunia Pino Del Carpio ◽  
Roberto Lozano ◽  
Alfred Ozimati ◽  
Marnin Wolfe ◽  
...  
Keyword(s):  
Association Mapping ◽  
Genomic Prediction ◽  
Manihot Esculenta ◽  
Genome Wide Association ◽  
Genome Wide
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