scholarly journals CYTOKININ OXIDASE/DEHYDROGENASE4 Integrates Cytokinin and Auxin Signaling to Control Rice Crown Root Formation

2014 ◽  
Vol 165 (3) ◽  
pp. 1035-1046 ◽  
Author(s):  
Shaopei Gao ◽  
Jun Fang ◽  
Fan Xu ◽  
Wei Wang ◽  
Xiaohong Sun ◽  
...  
Keyword(s):  
Root Formation ◽  
Auxin Signaling ◽  
Cytokinin Oxidase ◽  
Crown Root

scholarly journals Crown rootless1, Which Is Essential for Crown Root Formation in Rice, Is a Target of an AUXIN RESPONSE FACTOR in Auxin Signaling

2005 ◽  
Vol 17 (5) ◽  
pp. 1387-1396 ◽  
Author(s):  
Yoshiaki Inukai ◽  
Tomoaki Sakamoto ◽  
Miyako Ueguchi-Tanaka ◽  
Yohko Shibata ◽  
Kenji Gomi ◽  
...  
Keyword(s):  
Root Formation ◽  
Auxin Response Factor ◽  
Auxin Signaling ◽  
Response Factor ◽  
Auxin Response ◽  
Crown Root

scholarly journals PHYTOCHROME AND FLOWERING TIME1/MEDIATOR25 Regulates Lateral Root Formation via Auxin Signaling in Arabidopsis

2014 ◽  
Vol 165 (2) ◽  
pp. 880-894 ◽  
Author(s):  
Javier Raya-González ◽  
Randy Ortiz-Castro ◽  
León Francisco Ruíz-Herrera ◽  
Kemal Kazan ◽  
José López-Bucio
Keyword(s):  
Lateral Root ◽  
Root Formation ◽  
Auxin Signaling ◽  
Lateral Root Formation

scholarly journals Nod factors potentiate auxin signaling for transcriptional regulation and lateral root formation inMedicago truncatula

2017 ◽  
pp. erw474 ◽  
Author(s):  
Violaine Herrbach ◽  
Ximena Chirinos ◽  
David Rengel ◽  
Kokoévi Agbevenou ◽  
Rémy Vincent ◽  
...  
Keyword(s):  
Transcriptional Regulation ◽  
Lateral Root ◽  
Root Formation ◽  
Auxin Signaling ◽  
Lateral Root Formation ◽  
Nod Factors

scholarly journals Transcriptome profiling of laser-captured crown root primordia reveals new pathways activated during early stages of crown root formation in rice

PLoS ONE ◽  
2020 ◽  
Vol 15 (11) ◽  
pp. e0238736
Author(s):  
Jérémy Lavarenne ◽  
Mathieu Gonin ◽  
Antony Champion ◽  
Marie Javelle ◽  
Hélène Adam ◽  
...  
Keyword(s):  
Root Formation ◽  
Developmental Stages ◽  
Transcriptome Profiling ◽  
Rice Root ◽  
Primary Data ◽  
Root Initiation ◽  
Root Primordia ◽  
Data Resource ◽  
Crown Root ◽  
Crown Roots

Crown roots constitute the main part of the rice root system. Several key genes involved in crown root initiation and development have been identified by functional genomics approaches. Nevertheless, these approaches are impaired by functional redundancy and mutant lethality. To overcome these limitations, organ targeted transcriptome analysis can help to identify genes involved in crown root formation and early development. In this study, we generated an atlas of genes expressed in developing crown root primordia in comparison with adjacent stem cortical tissue at three different developmental stages before emergence, using laser capture microdissection. We identified 3975 genes differentially expressed in crown root primordia. About 30% of them were expressed at the three developmental stages, whereas 10.5%, 19.5% and 12.8% were specifically expressed at the early, intermediate and late stages, respectively. Sorting them by functional ontology highlighted an active transcriptional switch during the process of crown root primordia formation. Cross-analysis with other rice root development-related datasets revealed genes encoding transcription factors, chromatin remodeling factors, peptide growth factors, and cell wall remodeling enzymes that are likely to play a key role during crown root primordia formation. This atlas constitutes an open primary data resource for further studies on the regulation of crown root initiation and development.

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