scholarly journals RBF1, a Plant Homolog of the Bacterial Ribosome-Binding Factor RbfA, Acts in Processing of the Chloroplast 16S Ribosomal RNA

2013 ◽  
Vol 164 (1) ◽  
pp. 201-215 ◽  
Author(s):  
R. Fristedt ◽  
L. B. Scharff ◽  
C. A. Clarke ◽  
Q. Wang ◽  
C. Lin ◽  
...  
Keyword(s):  
Ribosomal Rna ◽  
16S Ribosomal Rna ◽  
Ribosome Binding ◽  
Bacterial Ribosome ◽  
Binding Factor ◽  
Plant Homolog

Study of the Functional Interaction of the 900 Tetraloop of 16S Ribosomal RNA with Helix 24 within the Bacterial Ribosome

2004 ◽  
Vol 338 (4) ◽  
pp. 683-693 ◽  
Author(s):  
François Bélanger ◽  
Matthieu G. Gagnon ◽  
Sergey V. Steinberg ◽  
Philip R. Cunningham ◽  
Léa Brakier-Gingras
Keyword(s):  
Ribosomal Rna ◽  
16S Ribosomal Rna ◽  
Functional Interaction ◽  
Bacterial Ribosome

scholarly journals Solving the Riddle of the Evolution of Shine-Dalgarno Based Translation in Chloroplasts

2019 ◽  
Vol 36 (12) ◽  
pp. 2854-2860 ◽  
Author(s):  
Iddo Weiner ◽  
Noam Shahar ◽  
Pini Marco ◽  
Iftach Yacoby ◽  
Tamir Tuller
Keyword(s):  
Chlamydomonas Reinhardtii ◽  
Ribosomal Rna ◽  
Translation Initiation ◽  
Local Structure ◽  
Computational Simulation ◽  
Point Mutations ◽  
Reporter Genes ◽  
16S Ribosomal Rna ◽  
Ribosome Binding ◽  
16S Gene

Abstract Chloroplasts originated from an ancient cyanobacterium and still harbor a bacterial-like genome. However, the centrality of Shine–Dalgarno ribosome binding, which predominantly regulates proteobacterial translation initiation, is significantly decreased in chloroplasts. As plastid ribosomal RNA anti-Shine–Dalgarno elements are similar to their bacterial counterparts, these sites alone cannot explain this decline. By computational simulation we show that upstream point mutations modulate the local structure of ribosomal RNA in chloroplasts, creating significantly tighter structures around the anti-Shine–Dalgarno locus, which in-turn reduce the probability of ribosome binding. To validate our model, we expressed two reporter genes (mCherry, hydrogenase) harboring a Shine–Dalgarno motif in the Chlamydomonas reinhardtii chloroplast. Coexpressing them with a 16S ribosomal RNA, modified according to our model, significantly enhances mCherry and hydrogenase expression compared with coexpression with an endogenous 16S gene.

scholarly journals A functional pseudoknot in 16S ribosomal RNA.

1991 ◽  
Vol 10 (8) ◽  
pp. 2203-2214 ◽  
Author(s):  
T. Powers ◽  
H.F. Noller
Keyword(s):  
Ribosomal Rna ◽  
16S Ribosomal Rna

A Comparison Between Elastic Network Interpolation and MD Simulation of 16S Ribosomal RNA

2003 ◽  
Vol 21 (3) ◽  
pp. 395-405 ◽  
Author(s):  
Moon K. Kim ◽  
Wen Li ◽  
Bruce A. Shapiro ◽  
Gregory S. Chirikjian
Keyword(s):  
Ribosomal Rna ◽  
Md Simulation ◽  
16S Ribosomal Rna ◽  
Elastic Network

scholarly journals Detection of Alcaligenes chronic endophthalmitis mimicking noninfectious uveitis with 16S ribosomal RNA PCR

2021 ◽  
Author(s):  
Tina Felfeli ◽  
Felicia Tai ◽  
Peng Yan ◽  
Tony Mazzulli ◽  
Nupura K. Bakshi ◽  
...  
Keyword(s):  
Ribosomal Rna ◽  
16S Ribosomal Rna

Studies on the structure and function of 16S ribosomal RNA using structure-specific chemical probes

1985 ◽  
Vol 8 (3-4) ◽  
pp. 747-755 ◽  
Author(s):  
Harry F. Noller ◽  
Barbara J. Van Stolk ◽  
Danesh Moazed ◽  
Stephen Douthwaite ◽  
Robin R. Gutell
Keyword(s):  
Ribosomal Rna ◽  
Structure And Function ◽  
16S Ribosomal Rna ◽  
Chemical Probes ◽  
Specific Chemical ◽  
And Function
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