scholarly journals High-Throughput Quantification of Root Growth Using a Novel Image-Analysis Tool

2009 ◽  
Vol 150 (4) ◽  
pp. 1784-1795 ◽  
Author(s):  
Andrew French ◽  
Susana Ubeda-Tomás ◽  
Tara J. Holman ◽  
Malcolm J. Bennett ◽  
Tony Pridmore
Keyword(s):  
Image Analysis ◽  
Root Growth ◽  
High Throughput ◽  
Analysis Tool

Estimation in the Field of Individual Perennial Ryegrass Plant Position and Dry Matter Production Using a Custom-Made High-Throughput Image Analysis Tool

Crop Science ◽  
2015 ◽  
Vol 55 (6) ◽  
pp. 2910-2917 ◽  
Author(s):  
Chris L. Hunt ◽  
Chris S. Jones ◽  
Michael J. Hickey ◽  
John P. Koolaard ◽  
John West ◽  
...  
Keyword(s):  
Image Analysis ◽  
High Throughput ◽  
Perennial Ryegrass ◽  
Dry Matter ◽  
Dry Matter Production ◽  
Analysis Tool ◽  
Matter Production ◽  
Custom Made

scholarly journals Analysis of Maize (Zea mays L.) Seedling Roots with the High-Throughput Image Analysis Tool ARIA (Automatic Root Image Analysis)

PLoS ONE ◽  
2014 ◽  
Vol 9 (9) ◽  
pp. e108255 ◽  
Author(s):  
Jordon Pace ◽  
Nigel Lee ◽  
Hsiang Sing Naik ◽  
Baskar Ganapathysubramanian ◽  
Thomas Lübberstedt
Keyword(s):  
Zea Mays ◽  
Image Analysis ◽  
High Throughput ◽  
Zea Mays L ◽  
Analysis Tool ◽  
Seedling Roots ◽  
Root Image Analysis

scholarly journals Maize-IAS: a maize image analysis software using deep learning for high-throughput plant phenotyping

Plant Methods ◽  
2021 ◽  
Vol 17 (1) ◽  
Author(s):  
Shuo Zhou ◽  
Xiujuan Chai ◽  
Zixuan Yang ◽  
Hongwu Wang ◽  
Chenxue Yang ◽  
...  
Keyword(s):  
Computer Vision ◽  
Image Analysis ◽  
Deep Learning ◽  
High Throughput ◽  
Batch Processing ◽  
Plant Phenotyping ◽  
Plant Science ◽  
Analysis Software ◽  
Image Analysis Software ◽  
Maize Growth

Abstract Background Maize (Zea mays L.) is one of the most important food sources in the world and has been one of the main targets of plant genetics and phenotypic research for centuries. Observation and analysis of various morphological phenotypic traits during maize growth are essential for genetic and breeding study. The generally huge number of samples produce an enormous amount of high-resolution image data. While high throughput plant phenotyping platforms are increasingly used in maize breeding trials, there is a reasonable need for software tools that can automatically identify visual phenotypic features of maize plants and implement batch processing on image datasets. Results On the boundary between computer vision and plant science, we utilize advanced deep learning methods based on convolutional neural networks to empower the workflow of maize phenotyping analysis. This paper presents Maize-IAS (Maize Image Analysis Software), an integrated application supporting one-click analysis of maize phenotype, embedding multiple functions: (I) Projection, (II) Color Analysis, (III) Internode length, (IV) Height, (V) Stem Diameter and (VI) Leaves Counting. Taking the RGB image of maize as input, the software provides a user-friendly graphical interaction interface and rapid calculation of multiple important phenotypic characteristics, including leaf sheath points detection and leaves segmentation. In function Leaves Counting, the mean and standard deviation of difference between prediction and ground truth are 1.60 and 1.625. Conclusion The Maize-IAS is easy-to-use and demands neither professional knowledge of computer vision nor deep learning. All functions for batch processing are incorporated, enabling automated and labor-reduced tasks of recording, measurement and quantitative analysis of maize growth traits on a large dataset. We prove the efficiency and potential capability of our techniques and software to image-based plant research, which also demonstrates the feasibility and capability of AI technology implemented in agriculture and plant science.

scholarly journals Alignment of Au nanorods along de novo designed protein nanofibers studied with automated image analysis

Soft Matter ◽  
2021 ◽  
Author(s):  
Muammer Y. Yaman ◽  
Kathryn N. Guye ◽  
Maxim Ziatdinov ◽  
Hao Shen ◽  
David Baker ◽  
...  
Keyword(s):  
Image Analysis ◽  
De Novo ◽  
Automated Image Analysis ◽  
Analysis Tool ◽  
Au Nanorods

In this study, we focus on exploring the directional assembly of anisotropic Au nanorods along de novo designed 1D protein nanofiber templates using automated image analysis tool.

scholarly journals Identifying biological landmarks using a novel cell measuring image analysis tool: Cell-o-Tape

Plant Methods ◽  
2012 ◽  
Vol 8 (1) ◽  
pp. 7 ◽  
Author(s):  
Andrew P French ◽  
Michael H Wilson ◽  
Kim Kenobi ◽  
Daniela Dietrich ◽  
Ute Voss ◽  
...  
Keyword(s):  
Image Analysis ◽  
Analysis Tool

Automated image analysis tool to measure microbial growth on solid cultures

2018 ◽  
Vol 151 ◽  
pp. 426-430 ◽  
Author(s):  
Francisco Javier Ancin-Murguzur ◽  
Aitor Barbero-López ◽  
Sari Kontunen-Soppela ◽  
Antti Haapala
Keyword(s):  
Image Analysis ◽  
Microbial Growth ◽  
Automated Image Analysis ◽  
Analysis Tool

IHCREAD: AN AUTOMATIC IMMUNOHISTOCHEMISTRY IMAGE ANALYSIS TOOL

2011 ◽  
pp. 137-143
Author(s):  
Chao-Yen Hsu ◽  
Rouh-Mei Hu ◽  
Rong-Ming Chen ◽  
Jong-Waye Ou ◽  
Jeffrey J.P. Tsai
Keyword(s):  
Image Analysis ◽  
Analysis Tool

High-Throughput Image Analysis of

2021 ◽  
pp. 285-303
Author(s):  
Nathanael Miller ◽  
Dane Wolf ◽  
Nour Alsabeeh ◽  
Kiana Mahdaviani ◽  
Mayuko Segawa ◽  
...  
Keyword(s):  
Image Analysis ◽  
High Throughput
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